79-531: Calamus aromaticus Garsault Acorus calamus (also called sweet flag , sway or muskrat root , among many other common names) is a species of flowering plant with psychoactive chemicals . It is a tall wetland monocot of the family Acoraceae , in the genus Acorus . Although used in traditional medicine over centuries to treat digestive disorders and pain, there is no clinical evidence for its safety or efficacy – and ingested calamus may be toxic – leading to its commercial ban in
158-423: A mutation–selection balance . It is predicted that a viral quasispecies at a low but evolutionarily neutral and highly connected (that is, flat) region in the fitness landscape will outcompete a quasispecies located at a higher but narrower fitness peak in which the surrounding mutants are unfit, "the quasispecies effect" or the "survival of the flattest". There is no suggestion that a viral quasispecies resembles
237-542: A volatile oil that gives a characteristic odor and flavor. Major components of the oil are beta- asarone (as much as 75%), methyl isoeugenol (as much as 40%) and alpha-asarone, saponins , lectins , sesquiterpenoids , lignans , and steroids . Phytochemicals in the plant vary according to geographic location, plant age, climate, species variety, and plant component extracted . Diploids do not contain beta-asarone. A. calamus and products derived from A. calamus (such as its oil) were banned from use as human food or as
316-400: A "classical" method of determining species, such as with Linnaeus, early in evolutionary theory. However, different phenotypes are not necessarily different species (e.g. a four-winged Drosophila born to a two-winged mother is not a different species). Species named in this manner are called morphospecies . In the 1970s, Robert R. Sokal , Theodore J. Crovello and Peter Sneath proposed
395-424: A 'smallest clade' idea" (a phylogenetic species concept). Mishler and Wilkins and others concur with this approach, even though this would raise difficulties in biological nomenclature. Wilkins cited the ichthyologist Charles Tate Regan 's early 20th century remark that "a species is whatever a suitably qualified biologist chooses to call a species". Wilkins noted that the philosopher Philip Kitcher called this
474-428: A connected series of neighbouring populations, each of which can sexually interbreed with adjacent related populations, but for which there exist at least two "end" populations in the series, which are too distantly related to interbreed, though there is a potential gene flow between each "linked" population. Such non-breeding, though genetically connected, "end" populations may co-exist in the same region thus closing
553-432: A different species from its ancestors. Viruses have enormous populations, are doubtfully living since they consist of little more than a string of DNA or RNA in a protein coat, and mutate rapidly. All of these factors make conventional species concepts largely inapplicable. A viral quasispecies is a group of genotypes related by similar mutations, competing within a highly mutagenic environment, and hence governed by
632-732: A food additive in 1968 by the United States Food and Drug Administration . Although limits on consumption in food or alcoholic beverages (115 micrograms per day) were recommended in a 2001 ruling by the European Commission , the degree of safe exposure remained undefined. Although calamus has been used for its fragrance and ingested, it has not been studied by rigorous clinical research . Individual medical reports of toxicity mention severe nausea and prolonged vomiting over many hours following oral uses. Laboratory studies of its extracts indicate other forms of toxicity, due mainly to
711-508: A genetic boundary suitable for defining a species concept is present. DNA barcoding has been proposed as a way to distinguish species suitable even for non-specialists to use. One of the barcodes is a region of mitochondrial DNA within the gene for cytochrome c oxidase . A database, Barcode of Life Data System , contains DNA barcode sequences from over 190,000 species. However, scientists such as Rob DeSalle have expressed concern that classical taxonomy and DNA barcoding, which they consider
790-465: A lineage should be divided into multiple chronospecies , or when populations have diverged to have enough distinct character states to be described as cladistic species. Species and higher taxa were seen from the time of Aristotle until the 18th century as categories that could be arranged in a hierarchy, the great chain of being . In the 19th century, biologists grasped that species could evolve given sufficient time. Charles Darwin 's 1859 book On
869-492: A misnomer, need to be reconciled, as they delimit species differently. Genetic introgression mediated by endosymbionts and other vectors can further make barcodes ineffective in the identification of species. A phylogenetic or cladistic species is "the smallest aggregation of populations (sexual) or lineages (asexual) diagnosable by a unique combination of character states in comparable individuals (semaphoronts)". The empirical basis – observed character states – provides
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#1732859234585948-449: A particular species, including which genus (and higher taxa) it is placed in, is a hypothesis about the evolutionary relationships and distinguishability of that group of organisms. As further information comes to hand, the hypothesis may be corroborated or refuted. Sometimes, especially in the past when communication was more difficult, taxonomists working in isolation have given two distinct names to individual organisms later identified as
1027-400: A perfect model of life, it is still a useful tool to scientists and conservationists for studying life on Earth, regardless of the theoretical difficulties. If species were fixed and clearly distinct from one another, there would be no problem, but evolutionary processes cause species to change. This obliges taxonomists to decide, for example, when enough change has occurred to declare that
1106-400: A short way of saying that something applies to many species within a genus, but not to all. If scientists mean that something applies to all species within a genus, they use the genus name without the specific name or epithet. The names of genera and species are usually printed in italics . However, abbreviations such as "sp." should not be italicised. When a species' identity is not clear,
1185-494: A shrivelled appearance. This form will never form fruit (let alone seeds) and can only spread asexually. The tetraploid variety is usually known as Acorus calamus var. angustatus Besser . A number of synonyms are known, but some of those are contested as to which variety they belong. It is morphologically diverse, with some forms having very broad and some narrow leaves. It is also cytotypically diverse, with an array of different karyotypes . Calamus leaves and rhizomes contain
1264-404: A specialist may use "cf." before the epithet to indicate that confirmation is required. The abbreviations "nr." (near) or "aff." (affine) may be used when the identity is unclear but when the species appears to be similar to the species mentioned after. With the rise of online databases, codes have been devised to provide identifiers for species that are already defined, including: The naming of
1343-523: A species as groups of actually or potentially interbreeding natural populations, which are reproductively isolated from other such groups. It has been argued that this definition is a natural consequence of the effect of sexual reproduction on the dynamics of natural selection. Mayr's use of the adjective "potentially" has been a point of debate; some interpretations exclude unusual or artificial matings that occur only in captivity, or that involve animals capable of mating but that do not normally do so in
1422-400: A species as determined by a taxonomist. A typological species is a group of organisms in which individuals conform to certain fixed properties (a type), so that even pre-literate people often recognise the same taxon as do modern taxonomists. The clusters of variations or phenotypes within specimens (such as longer or shorter tails) would differentiate the species. This method was used as
1501-488: A species. All species definitions assume that an organism acquires its genes from one or two parents very like the "daughter" organism, but that is not what happens in HGT. There is strong evidence of HGT between very dissimilar groups of prokaryotes , and at least occasionally between dissimilar groups of eukaryotes , including some crustaceans and echinoderms . The evolutionary biologist James Mallet concludes that there
1580-685: A species. Generally the term includes the unknown element of a distinct act of creation. Many authors have argued that a simple textbook definition, following Mayr's concept, works well for most multi-celled organisms , but breaks down in several situations: Species identification is made difficult by discordance between molecular and morphological investigations; these can be categorised as two types: (i) one morphology, multiple lineages (e.g. morphological convergence , cryptic species ) and (ii) one lineage, multiple morphologies (e.g. phenotypic plasticity , multiple life-cycle stages). In addition, horizontal gene transfer (HGT) makes it difficult to define
1659-519: A taxonomic decision at the discretion of cognizant specialists, is not governed by the Codes of Zoological or Botanical Nomenclature, in contrast to the PhyloCode , and contrary to what is done in several other fields, in which the definitions of technical terms, like geochronological units and geopolitical entities, are explicitly delimited. The nomenclatural codes that guide the naming of species, including
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#17328592345851738-557: A tetraploid form (see below). The triploid form is the most common and is thought to have arisen relatively recently in the Himalayan region through hybridisation of the diploid with the tetraploid. Probably indigenous to most of Asia, the triploid form Acorus calamus var. calamus (also known as var. vulgaris or var. verus ) has now been introduced across Europe , Australia , New Guinea , South Africa , Réunion and North America . The tetraploid form Acorus calamus var. angustatus
1817-506: A traditional biological species. The International Committee on Taxonomy of Viruses has since 1962 developed a universal taxonomic scheme for viruses; this has stabilised viral taxonomy. Most modern textbooks make use of Ernst Mayr 's 1942 definition, known as the Biological Species Concept as a basis for further discussion on the definition of species. It is also called a reproductive or isolation concept. This defines
1896-447: A variation on the morphological species concept, a phenetic species, defined as a set of organisms with a similar phenotype to each other, but a different phenotype from other sets of organisms. It differs from the morphological species concept in including a numerical measure of distance or similarity to cluster entities based on multivariate comparisons of a reasonably large number of phenotypic traits. A mate-recognition species
1975-515: A variety of reasons. Viruses are a special case, driven by a balance of mutation and selection , and can be treated as quasispecies . Biologists and taxonomists have made many attempts to define species, beginning from morphology and moving towards genetics . Early taxonomists such as Linnaeus had no option but to describe what they saw: this was later formalised as the typological or morphological species concept. Ernst Mayr emphasised reproductive isolation, but this, like other species concepts,
2054-438: Is "an entity composed of organisms which maintains its identity from other such entities through time and over space, and which has its own independent evolutionary fate and historical tendencies". This differs from the biological species concept in embodying persistence over time. Wiley and Mayden stated that they see the evolutionary species concept as "identical" to Willi Hennig 's species-as-lineages concept, and asserted that
2133-400: Is a group of sexually reproducing organisms that recognise one another as potential mates. Expanding on this to allow for post-mating isolation, a cohesion species is the most inclusive population of individuals having the potential for phenotypic cohesion through intrinsic cohesion mechanisms; no matter whether populations can hybridise successfully, they are still distinct cohesion species if
2212-452: Is a population of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring , typically by sexual reproduction . It is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity . Other ways of defining species include their karyotype , DNA sequence, morphology , behaviour, or ecological niche . In addition, paleontologists use
2291-458: Is a set of organisms adapted to a particular set of resources, called a niche, in the environment. According to this concept, populations form the discrete phenetic clusters that we recognise as species because the ecological and evolutionary processes controlling how resources are divided up tend to produce those clusters. A genetic species as defined by Robert Baker and Robert Bradley is a set of genetically isolated interbreeding populations. This
2370-414: Is called speciation . Charles Darwin was the first to describe the role of natural selection in speciation in his 1859 book The Origin of Species . Speciation depends on a measure of reproductive isolation , a reduced gene flow. This occurs most easily in allopatric speciation, where populations are separated geographically and can diverge gradually as mutations accumulate. Reproductive isolation
2449-412: Is called the specific name or the specific epithet (in botanical nomenclature , also sometimes in zoological nomenclature ). For example, Boa constrictor is one of the species of the genus Boa , with constrictor being the species' epithet. While the definitions given above may seem adequate at first glance, when looked at more closely they represent problematic species concepts. For example,
Acorus calamus - Misplaced Pages Continue
2528-462: Is derived from Greek κάλαμος (kálamos, meaning "reed"), cognate to Latin culmus ("stalk") and Old English healm ("straw"), Arabic قَلَم (qálam, "pen"), in turn from Proto-Indo European *kole-mo- (thought to mean "grass" or "reed"). The name "sweet flag" refers to its sweet scent and its similarity to Iris species, which have been commonly known as flags in English since at least
2607-403: Is described formally, in a publication that assigns it a unique scientific name. The description typically provides means for identifying the new species, which may not be based solely on morphology (see cryptic species ), differentiating it from other previously described and related or confusable species and provides a validly published name (in botany) or an available name (in zoology) when
2686-671: Is further weakened by the existence of microspecies , groups of organisms, including many plants, with very little genetic variability, usually forming species aggregates . For example, the dandelion Taraxacum officinale and the blackberry Rubus fruticosus are aggregates with many microspecies—perhaps 400 in the case of the blackberry and over 200 in the dandelion, complicated by hybridisation , apomixis and polyploidy , making gene flow between populations difficult to determine, and their taxonomy debatable. Species complexes occur in insects such as Heliconius butterflies, vertebrates such as Hypsiboas treefrogs, and fungi such as
2765-726: Is hard or even impossible to test. Later biologists have tried to refine Mayr's definition with the recognition and cohesion concepts, among others. Many of the concepts are quite similar or overlap, so they are not easy to count: the biologist R. L. Mayden recorded about 24 concepts, and the philosopher of science John Wilkins counted 26. Wilkins further grouped the species concepts into seven basic kinds of concepts: (1) agamospecies for asexual organisms (2) biospecies for reproductively isolated sexual organisms (3) ecospecies based on ecological niches (4) evolutionary species based on lineage (5) genetic species based on gene pool (6) morphospecies based on form or phenotype and (7) taxonomic species,
2844-524: Is native throughout Asia, from India to Japan and the Philippines and from Indonesia to Siberia. The diploid form Acorus americanus or Acorus calamus var. americanus is found in northern subarctic North America and scattered disjunct areas throughout the Mississippi Valley . It may not be native to some of these areas, Pre-Columbian populations are thought to have dispersed it across parts of
2923-403: Is no easy way to tell whether related geographic or temporal forms belong to the same or different species. Species gaps can be verified only locally and at a point of time. One is forced to admit that Darwin's insight is correct: any local reality or integrity of species is greatly reduced over large geographic ranges and time periods. The botanist Brent Mishler argued that the species concept
3002-468: Is not valid, notably because gene flux decreases gradually rather than in discrete steps, which hampers objective delimitation of species. Indeed, complex and unstable patterns of gene flux have been observed in cichlid teleosts of the East African Great Lakes . Wilkins argued that "if we were being true to evolution and the consequent phylogenetic approach to taxa, we should replace it with
3081-586: Is similar to Mayr's Biological Species Concept, but stresses genetic rather than reproductive isolation. In the 21st century, a genetic species could be established by comparing DNA sequences. Earlier, other methods were available, such as comparing karyotypes (sets of chromosomes ) and allozymes ( enzyme variants). An evolutionarily significant unit (ESU) or "wildlife species" is a population of organisms considered distinct for purposes of conservation. In palaeontology , with only comparative anatomy (morphology) and histology from fossils as evidence,
3160-426: Is sometimes an important source of genetic variation. Viruses can transfer genes between species. Bacteria can exchange plasmids with bacteria of other species, including some apparently distantly related ones in different phylogenetic domains , making analysis of their relationships difficult, and weakening the concept of a bacterial species. Iris pseudacorus Too Many Requests If you report this error to
3239-781: Is sometimes used as a pond plant in horticulture. There is at least one tetraploid ornamental cultivar known; it is usually called 'Variegatus', but the RHS recommends calling it 'Argenteostriatus'. The asarone from A. calamus , found most abundantly in the dried and pulverized roots, has been identified as having insecticidal properties. β-asarone also exhibits anti-fungal activity by inhibiting ergosterol biosynthesis in Aspergillus niger . However, asarone's toxicity and carcinogenicity in mammals (including humans) means that it may be difficult to develop any practical medications or insecticides based on it. Species A species ( pl. : species)
Acorus calamus - Misplaced Pages Continue
3318-519: Is the Latin word acorus , which is derived from the Greek άχόρου (áchórou) of Dioscorides (note different versions of the text have different spellings). The word άχόρου itself is thought to have been derived from the word κόρη (kóri), which means pupil (of an eye), because of the juice from the root of the plant being used as a remedy in diseases of the eye ('darkening of the pupil'). The specific name calamus
3397-594: Is threatened by hybridisation, but this can be selected against once a pair of populations have incompatible alleles of the same gene, as described in the Bateson–Dobzhansky–Muller model . A different mechanism, phyletic speciation, involves one lineage gradually changing over time into a new and distinct form (a chronospecies ), without increasing the number of resultant species. Horizontal gene transfer between organisms of different species, either through hybridisation , antigenic shift , or reassortment ,
3476-449: Is usual with Araceae , is absent. The spadix is densely crowded with tiny greenish-yellow flowers. Each flower contains six petals and stamens enclosed in a perianth with six divisions, surrounding a three-celled, oblong ovary with a sessile stigma. The flowers are sweetly fragrant. In Europe, it flowers for about a month in late spring or early summer, but does not bear fruit. The fruit is a berry filled with mucus, which when ripe falls into
3555-599: The Herbarius zu Teutsch , published at Mainz in 1485, describes and includes a woodcut of this iris under the name Acorus . This German book is one of three possible sources for the same error in the French Le Grant Herbier , written in 1486, 1488, 1498 or 1508, which was also published in an English translation as the Grete Herball by Peter Treveris in 1526; all of these contain the false identification printed in
3634-575: The Herbarius zu Teutsch . William Turner , writing in 1538, describes 'acorum' as "gladon or a flag, a yelowe floure delyce". The plant was introduced to Britain in the late 16th century. By at least 1596, true Acorus calamus was grown in Britain, as it is listed in The Catalogue , a list of plants John Gerard grew in his garden at Holborn. Gerard notes "It prospereth exceeding well in my garden, but as yet beareth neither flowers nor stalke". Gerard lists
3713-523: The ICZN for animals and the ICN for plants, do not make rules for defining the boundaries of the species. Research can change the boundaries, also known as circumscription, based on new evidence. Species may then need to be distinguished by the boundary definitions used, and in such cases the names may be qualified with sensu stricto ("in the narrow sense") to denote usage in the exact meaning given by an author such as
3792-457: The emetic compound β- asarone . A. calamus has been an item of trade in many cultures for centuries. It has been used medicinally for a wide variety of ailments, such as gastrointestinal diseases and treating pain, and its aroma makes calamus essential oil valued in the perfume industry. The essence from the rhizome is used as a flavor for foods, alcoholic beverages, and bitters in Europe. It
3871-399: The fly agaric . Natural hybridisation presents a challenge to the concept of a reproductively isolated species, as fertile hybrids permit gene flow between two populations. For example, the carrion crow Corvus corone and the hooded crow Corvus cornix appear and are classified as separate species, yet they can hybridise where their geographical ranges overlap. A ring species is
3950-498: The jaguar ( Panthera onca ) of Latin America or the leopard ( Panthera pardus ) of Africa and Asia. In contrast, the scientific names of species are chosen to be unique and universal (except for some inter-code homonyms ); they are in two parts used together : the genus as in Puma , and the specific epithet as in concolor . A species is given a taxonomic name when a type specimen
4029-406: The "cynical species concept", and arguing that far from being cynical, it usefully leads to an empirical taxonomy for any given group, based on taxonomists' experience. Other biologists have gone further and argued that we should abandon species entirely, and refer to the "Least Inclusive Taxonomic Units" (LITUs), a view that would be coherent with current evolutionary theory. The species concept
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#17328592345854108-471: The Latin name as Acorus verus , but it is evident there was still doubt about its veracity: in his 1597 herbal he lists the English common name as 'bastard calamus'. Carl O. Sauer reported that the tuber was already being used by North American Indians at the time of European contact. There are three cytotypic forms distinguished by chromosome number: a diploid form (2n=24), an infertile triploid form (2n=36), and
4187-622: The Origin of Species explained how species could arise by natural selection . That understanding was greatly extended in the 20th century through genetics and population ecology . Genetic variability arises from mutations and recombination , while organisms themselves are mobile, leading to geographical isolation and genetic drift with varying selection pressures . Genes can sometimes be exchanged between species by horizontal gene transfer ; new species can arise rapidly through hybridisation and polyploidy ; and species may become extinct for
4266-585: The United States. Sweet flag is a herbaceous perennial , 2 m (79 in) tall. Its leaves resemble those of the iris family . Sweet flag consists of tufts of basal leaves that rise from a spreading rhizome . The leaves are erect yellowish-brown, radical, with pink sheathing at their bases, sword-shaped, flat and narrow, tapering into a long, acute point, and have parallel veins. The leaves have smooth edges, which can be wavy or crimped. The sweet flag can be distinguished from iris and other similar plants by
4345-704: The United States. Other diploids are found in Mongolia , central Siberia ( Buryatia ), Gilgit–Baltistan in Pakistan (claimed by India) and northern Himachal Pradesh in India. Currently the taxonomic position of the different forms is contested. The comprehensive taxonomic analysis in Plants of the World Online from 2023 considers all three forms to be distinct varieties of a single species. The Flora of North America publication considers
4424-405: The abbreviation "sp." in the singular or "spp." (standing for species pluralis , Latin for "multiple species") in the plural in place of the specific name or epithet (e.g. Canis sp.). This commonly occurs when authors are confident that some individuals belong to a particular genus but are not sure to which exact species they belong, as is common in paleontology . Authors may also use "spp." as
4503-570: The amount of hybridisation is insufficient to completely mix their respective gene pools . A further development of the recognition concept is provided by the biosemiotic concept of species. In microbiology , genes can move freely even between distantly related bacteria, possibly extending to the whole bacterial domain. As a rule of thumb, microbiologists have assumed that members of Bacteria or Archaea with 16S ribosomal RNA gene sequences more similar than 97% to each other need to be checked by DNA–DNA hybridisation to decide if they belong to
4582-474: The biological species concept, "the several versions" of the phylogenetic species concept, and the idea that species are of the same kind as higher taxa are not suitable for biodiversity studies (with the intention of estimating the number of species accurately). They further suggested that the concept works for both asexual and sexually-reproducing species. A version of the concept is Kevin de Queiroz 's "General Lineage Concept of Species". An ecological species
4661-505: The biological species concept, a cladistic species does not rely on reproductive isolation – its criteria are independent of processes that are integral in other concepts. Therefore, it applies to asexual lineages. However, it does not always provide clear cut and intuitively satisfying boundaries between taxa, and may require multiple sources of evidence, such as more than one polymorphic locus, to give plausible results. An evolutionary species, suggested by George Gaylord Simpson in 1951,
4740-428: The boundaries between closely related species become unclear with hybridisation , in a species complex of hundreds of similar microspecies , and in a ring species . Also, among organisms that reproduce only asexually , the concept of a reproductive species breaks down, and each clone is potentially a microspecies. Although none of these are entirely satisfactory definitions, and while the concept of species may not be
4819-433: The concept of a chronospecies can be applied. During anagenesis (evolution, not necessarily involving branching), some palaeontologists seek to identify a sequence of species, each one derived from the phyletically extinct one before through continuous, slow and more or less uniform change. In such a time sequence, some palaeontologists assess how much change is required for a morphologically distinct form to be considered
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#17328592345854898-416: The concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. About 14% of these had been described by 2011. All species (except viruses ) are given a two-part name , called a "binomial". The first part of a binomial is the genus to which the species belongs. The second part
4977-400: The crimped edges of the leaves, the fragrant odor it emits when crushed, and the presence of a spadix . Only plants that grow in water bear flowers. The solid, triangular flower-stems rise from the axils of the outer leaves. A semi-erect spadix emerges from one side of the flower stem. The spadix is solid, cylindrical, tapers at each end, and is 5 to 10 cm in length. A covering spathe, as
5056-558: The diploid and triploid forms). The treatment in the Flora of China from 2010 considers all varieties to be synonyms of a single taxonomically undifferentiated species, since characteristics that are treated as distinctive in the Flora of North America are subject to morphological overlap in Asian specimens. The primary morphological distinction between the triploid and the North American forms of
5135-476: The diploid form to be a distinct species; its analysis differentiates North American diploid forms from triploid and tetraploid varieties, and does not take into account the morphology of Asian forms of the diploid variety. Also, in older literature, the name Acorus americanus may be used indiscriminately for all forms of Acorus calamus occurring in North America, irrespective of cytological diversity (i.e. both
5214-459: The diploid is made by the number of prominent leaf veins, the diploid having a prominent midvein with equally raised secondary veins on both sides, the triploid having a single prominent midvein with the secondary veins barely distinct. According to the Flora of China, there is clear overlap in these characteristics and the different cytotypes are impossible to distinguish morphologically. Triploid plants are infertile and show an abortive ovary with
5293-435: The evidence to support hypotheses about evolutionarily divergent lineages that have maintained their hereditary integrity through time and space. Molecular markers may be used to determine diagnostic genetic differences in the nuclear or mitochondrial DNA of various species. For example, in a study done on fungi , studying the nucleotide characters using cladistic species produced the most accurate results in recognising
5372-557: The late fourteenth century. The plant was already mentioned in the Chester Beatty papyrus VI dating to approximately 1300 BC. The ancient Egyptians rarely mentioned the plant in medicinal contexts, but it was certainly used to make perfumes. Initially, Europeans confused the identity and medicinal uses of the Acorus calamus of the Romans and Greeks with their native Iris pseudacorus . Thus
5451-478: The numerous fungi species of all the concepts studied. Versions of the phylogenetic species concept that emphasise monophyly or diagnosability may lead to splitting of existing species, for example in Bovidae , by recognising old subspecies as species, despite the fact that there are no reproductive barriers, and populations may intergrade morphologically. Others have called this approach taxonomic inflation , diluting
5530-585: The paper is accepted for publication. The type material is usually held in a permanent repository, often the research collection of a major museum or university, that allows independent verification and the means to compare specimens. Describers of new species are asked to choose names that, in the words of the International Code of Zoological Nomenclature , are "appropriate, compact, euphonious, memorable, and do not cause offence". Books and articles sometimes intentionally do not identify species fully, using
5609-674: The person who named the species, while the antonym sensu lato ("in the broad sense") denotes a wider usage, for instance including other subspecies. Other abbreviations such as "auct." ("author"), and qualifiers such as "non" ("not") may be used to further clarify the sense in which the specified authors delineated or described the species. Species are subject to change, whether by evolving into new species, exchanging genes with other species, merging with other species or by becoming extinct. The evolutionary process by which biological populations of sexually-reproducing organisms evolve to become distinct or reproductively isolated as species
5688-487: The result of misclassification leading to questions on whether there really are any ring species. The commonly used names for kinds of organisms are often ambiguous: "cat" could mean the domestic cat, Felis catus , or the cat family, Felidae . Another problem with common names is that they often vary from place to place, so that puma, cougar, catamount, panther, painter and mountain lion all mean Puma concolor in various parts of America, while "panther" may also mean
5767-573: The ring. Ring species thus present a difficulty for any species concept that relies on reproductive isolation. However, ring species are at best rare. Proposed examples include the herring gull – lesser black-backed gull complex around the North pole, the Ensatina eschscholtzii group of 19 populations of salamanders in America, and the greenish warbler in Asia, but many so-called ring species have turned out to be
5846-508: The same species. This concept was narrowed in 2006 to a similarity of 98.7%. The average nucleotide identity (ANI) method quantifies genetic distance between entire genomes , using regions of about 10,000 base pairs . With enough data from genomes of one genus, algorithms can be used to categorize species, as for Pseudomonas avellanae in 2013, and for all sequenced bacteria and archaea since 2020. Observed ANI values among sequences appear to have an "ANI gap" at 85–95%, suggesting that
5925-529: The same species. When two species names are discovered to apply to the same species, the older species name is given priority and usually retained, and the newer name considered as a junior synonym, a process called synonymy . Dividing a taxon into multiple, often new, taxa is called splitting . Taxonomists are often referred to as "lumpers" or "splitters" by their colleagues, depending on their personal approach to recognising differences or commonalities between organisms. The circumscription of taxa, considered
6004-502: The species concept and making taxonomy unstable. Yet others defend this approach, considering "taxonomic inflation" pejorative and labelling the opposing view as "taxonomic conservatism"; claiming it is politically expedient to split species and recognise smaller populations at the species level, because this means they can more easily be included as endangered in the IUCN red list and can attract conservation legislation and funding. Unlike
6083-902: The water and disperses by floating. In Asia, it also fruits sparingly, and propagates itself mainly by growth of its rhizome, forming colonies. The branched, cylindrical, knobby rhizome is the thickness of a human finger and has numerous coarse fibrous roots below it. The exterior is brown and the interior white. Sweet flag grows in India , Nepal, central Asia, southern Russia and Siberia , Europe and North America. Habitats include edges of small lakes, ponds and rivers, marshes, swamps, and other wetlands. In addition to "sweet flag" and "calamus" other common names include beewort, bitter pepper root, calamus root, flag root, gladdon, myrtle flag, myrtle grass, myrtle root, myrtle sedge, pine root, sea sedge, sweet cane, sweet cinnamon, sweet grass, sweet myrtle, sweet root, sweet rush, sweet sedge and wada kaha. The generic name
6162-537: The wild. It is difficult to define a species in a way that applies to all organisms. The debate about species concepts is called the species problem. The problem was recognised even in 1859, when Darwin wrote in On the Origin of Species : I was much struck how entirely vague and arbitrary is the distinction between species and varieties. He went on to write: No one definition has satisfied all naturalists; yet every naturalist knows vaguely what he means when he speaks of
6241-520: Was also once used to make candy. The young stalks can be pulled when under 30 cm (12 in); the inner stems can be eaten raw. The roots can be washed, peeled, cut into small pieces, boiled, and simmered in syrup to make candy. Sweet flag has a long history of use in Chinese, Nepalese, and Indian herbal traditions. Sweet flag was and is used as an herbal medicine by the Chipewyan people . This plant
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