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Chimpanzee genome project

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The Chimpanzee Genome Project was an effort to determine the DNA sequence of the chimpanzee genome . Sequencing began in 2005 and by 2013 twenty-four individual chimpanzees had been sequenced. This project was folded into the Great Ape Genome Project .

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110-403: In 2013 high resolution sequences were published from each of the four recognized chimpanzee subspecies: Central chimpanzee , Pan troglodytes troglodytes , 10 sequences; Western chimpanzee , Pan troglodytes verus , 6 sequences; Nigeria-Cameroon chimpanzee , Pan troglodytes ellioti , 4 sequences; and Eastern chimpanzee , Pan troglodytes schweinfurthii , 4 sequences. They were all sequenced to

220-564: A lysosome to form a phagolysosome . The pathogen is killed by the activity of digestive enzymes or following a respiratory burst that releases free radicals into the phagolysosome. Phagocytosis evolved as a means of acquiring nutrients , but this role was extended in phagocytes to include engulfment of pathogens as a defense mechanism. Phagocytosis probably represents the oldest form of host defense, as phagocytes have been identified in both vertebrate and invertebrate animals. Neutrophils and macrophages are phagocytes that travel throughout

330-465: A "self" receptor called a major histocompatibility complex (MHC) molecule. There are two major subtypes of T cells: the killer T cell and the helper T cell . In addition there are regulatory T cells which have a role in modulating immune response. Killer T cells are a sub-group of T cells that kill cells that are infected with viruses (and other pathogens), or are otherwise damaged or dysfunctional. As with B cells, each type of T cell recognizes

440-423: A chemical barrier following menarche , when they become slightly acidic , while semen contains defensins and zinc to kill pathogens. In the stomach , gastric acid serves as a chemical defense against ingested pathogens. Within the genitourinary and gastrointestinal tracts, commensal flora serve as biological barriers by competing with pathogenic bacteria for food and space and, in some cases, changing

550-422: A condition known as "missing self". This term describes cells with low levels of a cell-surface marker called MHC I ( major histocompatibility complex )—a situation that can arise in viral infections of host cells. Normal body cells are not recognized and attacked by NK cells because they express intact self MHC antigens. Those MHC antigens are recognized by killer cell immunoglobulin receptors, which essentially put

660-584: A different antigen. Killer T cells are activated when their T-cell receptor binds to this specific antigen in a complex with the MHC Class I receptor of another cell. Recognition of this MHC:antigen complex is aided by a co-receptor on the T cell, called CD8 . The T cell then travels throughout the body in search of cells where the MHC I receptors bear this antigen. When an activated T cell contacts such cells, it releases cytotoxins , such as perforin , which form pores in

770-533: A diminished effect and may result in lower antibody production, and a lower immune response, than would be noted in a well-rested individual. Additionally, proteins such as NFIL3 , which have been shown to be closely intertwined with both T-cell differentiation and circadian rhythms , can be affected through the disturbance of natural light and dark cycles through instances of sleep deprivation. These disruptions can lead to an increase in chronic conditions such as heart disease, chronic pain, and asthma. In addition to

880-593: A key role in the ecology of rainforests; they play an important role as seed dispersers. Even though central chimpanzees and western lowland gorillas overlap the environment in which they live in they do not compete for food as their diets are different. According to the International Union for Conservation of Nature (IUCN), they classify the central chimpanzee as an endangered subspecies. Increasing human presence through deforestation and viruses pose great threats to them. Diseases in central chimpanzees pose risk to

990-401: A large decrease of the central chimpanzee population as well. This virus has drastic impact on the population of central chimpanzees. In 2011, an experiment began which would try to vaccinate the central chimpanzees, this experiment was performed on six central chimpanzees. Their experiment was to vaccinate central chimpanzees with a vaccine developed for humans. Their goal was to try to reduce

1100-516: A large issue to the central chimpanzee population. In 2004, an outbreak of Ebola of appeared in Central Africa. It had an enormous impact on the western lowland gorilla and therefore also had an impact on the central chimpanzee population. A study showed that the western lowland gorilla population in the area went from 380 individuals to 40. It is also noted in the study that the Ebola outbreak has caused

1210-486: A lifetime in captivity of 30 to 40 years, but some have been seen to live over 50 years. In the wild, the average lifetime decreases to 15 to 25 years. A physical characteristic that distinguishes the central chimpanzee from other subspecies is that it has less hair covering its face. This is most prevalent in female central chimpanzees. The arms are also longer than those of the other subspecies, and they also have longer fingers and short thumbs. All these characteristics help

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1320-399: A link between the bodily tissues and the innate and adaptive immune systems, as they present antigens to T cells , one of the key cell types of the adaptive immune system. Granulocytes are leukocytes that have granules in their cytoplasm. In this category are neutrophils, mast cells, basophils, and eosinophils. Mast cells reside in connective tissues and mucous membranes and regulate

1430-473: A major source of differences between human and chimpanzee genetic material, with about 2.7 percent of the genome now representing differences having been produced by gene duplications or deletions during approximately 6 million years since humans and chimpanzees diverged from their common evolutionary ancestor. The comparable variation within human populations is 0.5 percent. About 600 genes were identified that may have been undergoing strong positive selection in

1540-552: A mean of 25-fold coverage per individual. The research showed considerable genome diversity in chimpanzees with many population-specific traits. The central chimpanzees retain the highest diversity in the chimpanzee lineage, whereas the other subspecies demonstrate signs of population bottlenecks . Human and chimpanzee chromosomes are very alike. The primary difference is that humans have one fewer pair of chromosomes than do other great apes . Humans have 23 pairs of chromosomes and other great apes have 24 pairs of chromosomes. In

1650-446: A nearby protocadherin gene that may be important for brain development and function. Although changes in expression of genes that are expressed in the brain tend to be less than for other organs (such as liver) on average, gene expression changes in the brain have been more dramatic in the human lineage than in the chimpanzee lineage. This is consistent with the dramatic divergence of the unique pattern of human brain development seen in

1760-479: A preliminary analysis of 7600 genes shared between the two genomes confirmed that certain genes such as the forkhead-box P2 transcription factor , which is involved in speech development, are different in the human lineage. Several genes involved in hearing were also found to have changed during human evolution, suggesting selection involving human language -related behavior. Differences between individual humans and common chimpanzees are estimated to be about 10 times

1870-460: A pro-inflammatory state through the production of the pro-inflammatory cytokines interleukin-1, interleukin-12 , TNF-alpha and IFN-gamma . These cytokines then stimulate immune functions such as immune cell activation, proliferation, and differentiation . During this time of a slowly evolving adaptive immune response, there is a peak in undifferentiated or less differentiated cells, like naïve and central memory T cells. In addition to these effects,

1980-491: A reduced ability to destroy pathogens, is an example of an inherited, or congenital, immunodeficiency . AIDS and some types of cancer cause acquired immunodeficiency. Overactive immune responses form the other end of immune dysfunction, particularly the autoimmune diseases . Here, the immune system fails to properly distinguish between self and non-self, and attacks part of the body. Under normal circumstances, many T cells and antibodies react with "self" peptides. One of

2090-416: A rudimentary immune system in the form of enzymes that protect against viral infections. Other basic immune mechanisms evolved in ancient plants and animals and remain in their modern descendants. These mechanisms include phagocytosis , antimicrobial peptides called defensins , and the complement system . Jawed vertebrates , including humans, have even more sophisticated defense mechanisms, including

2200-471: A single MHC:antigen molecule. Helper T cell activation also requires longer duration of engagement with an antigen-presenting cell. The activation of a resting helper T cell causes it to release cytokines that influence the activity of many cell types. Cytokine signals produced by helper T cells enhance the microbicidal function of macrophages and the activity of killer T cells. In addition, helper T cell activation causes an upregulation of molecules expressed on

2310-460: A specific foreign antigen. This antigen/antibody complex is taken up by the B cell and processed by proteolysis into peptides . The B cell then displays these antigenic peptides on its surface MHC class II molecules. This combination of MHC and antigen attracts a matching helper T cell, which releases lymphokines and activates the B cell. As the activated B cell then begins to divide , its offspring ( plasma cells ) secrete millions of copies of

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2420-409: Is a transient immunodepression, where the number of circulating lymphocytes decreases and antibody production declines. This may give rise to a window of opportunity for infection and reactivation of latent virus infections, but the evidence is inconclusive. During exercise there is an increase in circulating white blood cells of all types. This is caused by the frictional force of blood flowing on

2530-446: Is activated by complement binding to antibodies that have attached to these microbes or the binding of complement proteins to carbohydrates on the surfaces of microbes . This recognition signal triggers a rapid killing response. The speed of the response is a result of signal amplification that occurs after sequential proteolytic activation of complement molecules, which are also proteases. After complement proteins initially bind to

2640-527: Is affected by sleep and rest, and sleep deprivation is detrimental to immune function. Complex feedback loops involving cytokines , such as interleukin-1 and tumor necrosis factor-α produced in response to infection, appear to also play a role in the regulation of non-rapid eye movement ( REM ) sleep. Thus the immune response to infection may result in changes to the sleep cycle, including an increase in slow-wave sleep relative to REM sleep. In people with sleep deprivation, active immunizations may have

2750-502: Is also recognized by the helper cell's CD4 co-receptor, which recruits molecules inside the T cell (such as Lck ) that are responsible for the T cell's activation. Helper T cells have a weaker association with the MHC:antigen complex than observed for killer T cells, meaning many receptors (around 200–300) on the helper T cell must be bound by an MHC:antigen to activate the helper cell, while killer T cells can be activated by engagement of

2860-549: Is an immune response that damages the body's own tissues. It is divided into four classes (Type I – IV) based on the mechanisms involved and the time course of the hypersensitive reaction. Type I hypersensitivity is an immediate or anaphylactic reaction, often associated with allergy. Symptoms can range from mild discomfort to death. Type I hypersensitivity is mediated by IgE , which triggers degranulation of mast cells and basophils when cross-linked by antigen. Type II hypersensitivity occurs when antibodies bind to antigens on

2970-415: Is an important feature of cellular innate immunity performed by cells called phagocytes that engulf pathogens or particles. Phagocytes generally patrol the body searching for pathogens, but can be called to specific locations by cytokines. Once a pathogen has been engulfed by a phagocyte, it becomes trapped in an intracellular vesicle called a phagosome , which subsequently fuses with another vesicle called

3080-456: Is due to their digestive specificities. So they do not seem to have a direct competition for food between central chimpanzees and western lowland gorillas. It was also seen that central chimpanzees in the Montane forest of Kahuzi swallowed two different types of leaves of Commelinaceae for medical purposes. This was seen in 2.1% of the fecal matter of the central chimpanzees. It was proposed that this

3190-721: Is encountered. Both innate and adaptive immunity depend on the ability of the immune system to distinguish between self and non-self molecules . In immunology, self molecules are components of an organism's body that can be distinguished from foreign substances by the immune system. Conversely, non-self molecules are those recognized as foreign molecules. One class of non-self molecules are called antigens (originally named for being anti body gen erators) and are defined as substances that bind to specific immune receptors and elicit an immune response. Several barriers protect organisms from infection, including mechanical, chemical, and biological barriers. The waxy cuticle of most leaves,

3300-530: Is mediated by transmembrane proteins known as toll-like receptors (TLRs). TLRs share a typical structural motif, the leucine rich repeats (LRRs) , which give them a curved shape. Toll-like receptors were first discovered in Drosophila and trigger the synthesis and secretion of cytokines and activation of other host defense programs that are necessary for both innate or adaptive immune responses. Ten toll-like receptors have been described in humans. Cells in

3410-504: Is to generate active forms of the inflammatory cytokines IL-1β and IL-18. The complement system is a biochemical cascade that attacks the surfaces of foreign cells. It contains over 20 different proteins and is named for its ability to "complement" the killing of pathogens by antibodies . Complement is the major humoral component of the innate immune response. Many species have complement systems, including non- mammals like plants, fish, and some invertebrates . In humans, this response

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3520-402: The "professional" phagocytes ( macrophages , neutrophils , and dendritic cells ). These cells identify and eliminate pathogens, either by attacking larger pathogens through contact or by engulfing and then killing microorganisms. The other cells involved in the innate response include innate lymphoid cells , mast cells , eosinophils , basophils , and natural killer cells . Phagocytosis

3630-832: The Cabinda exclave of Angola , southeast Nigeria , and possibly the coastal extension of the Democratic Republic of the Congo . Its range extends north to the Sanaga River in Cameroon, east to the Ubangi River that defines the border between the two Congos, and south to the Congo River , which defines a large part of the same border. Central chimpanzees are found predominantly in tropical moist forest and wet savanna woodlands, as well as

3740-748: The Chimpanzee Sequencing and Analysis Consortium , a group of scientists which is supported in part by the National Human Genome Research Institute , one of the National Institutes of Health . The article marked the completion of the draft genome sequence. A database now exists containing the genetic differences between human and chimpanzee genes, with about thirty-five million single-nucleotide changes, five million insertion/deletion events, and various chromosomal rearrangements . Gene duplications account for most of

3850-554: The FOXP2 gene (mentioned above) and this region also includes the Cystic fibrosis transmembrane conductance regulator (CFTR) gene, which is important for ion transport in tissues such as the salt-secreting epithelium of sweat glands. Human mutations in the CFTR gene might be selected for as a way to survive cholera . Another such region on chromosome 4 may contain elements regulating the expression of

3960-560: The Greek god of fields, groves, and wooded glens, Pan . Troglodytes is Greek for ' cave -dweller', and was coined by Johann Friedrich Blumenbach in his Handbuch der Naturgeschichte ( Handbook of Natural History ), published in 1779. The central chimpanzee mainly lives in Gabon , Cameroon , and Republic of the Congo , but also in the Central African Republic , Equatorial Guinea ,

4070-573: The endothelial cell surface and catecholamines affecting β-adrenergic receptors (βARs). The number of neutrophils in the blood increases and remains raised for up to six hours and immature forms are present. Although the increase in neutrophils (" neutrophilia ") is similar to that seen during bacterial infections, after exercise the cell population returns to normal by around 24 hours. The number of circulating lymphocytes (mainly natural killer cells ) decreases during intense exercise but returns to normal after 4 to 6 hours. Although up to 2% of

4180-449: The exoskeleton of insects, the shells and membranes of externally deposited eggs, and skin are examples of mechanical barriers that are the first line of defense against infection. Organisms cannot be completely sealed from their environments, so systems act to protect body openings such as the lungs , intestines , and the genitourinary tract . In the lungs, coughing and sneezing mechanically eject pathogens and other irritants from

4290-582: The forest-savanna mosaics where these two biomes meet, from sea level to 3,000 metres (9,800 ft). They tend to have larger ranges in the forest-savanna mosaics. The average range is 12.5 km (4.8 sq mi), but can vary from 5 km (1.9 sq mi) to 400 km (150 sq mi). The central chimpanzee averages 59.7 kilograms (132 lb) in males and 45.8 kilograms (101 lb) in females. Standing they measure on average 96 cm (38 in) for males and 80 cm (31 in) for females. Central chimpanzees usually have

4400-458: The innate immune system , such as dendritic cells, macrophages, monocytes, neutrophils, and epithelial cells, to identify two classes of molecules: pathogen-associated molecular patterns (PAMPs), which are associated with microbial pathogens , and damage-associated molecular patterns (DAMPs), which are associated with components of host's cells that are released during cell damage or cell death. Recognition of extracellular or endosomal PAMPs

4510-492: The lymphoid lineage . These cells are defined by the absence of antigen-specific B- or T-cell receptor (TCR) because of the lack of recombination activating gene . ILCs do not express myeloid or dendritic cell markers. Natural killer cells (NK cells) are lymphocytes and a component of the innate immune system that does not directly attack invading microbes. Rather, NK cells destroy compromised host cells, such as tumor cells or virus-infected cells, recognizing such cells by

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4620-627: The nervous systems. The immune system also plays a crucial role in embryogenesis (development of the embryo), as well as in tissue repair and regeneration . Hormones can act as immunomodulators , altering the sensitivity of the immune system. For example, female sex hormones are known immunostimulators of both adaptive and innate immune responses. Some autoimmune diseases such as lupus erythematosus strike women preferentially, and their onset often coincides with puberty . By contrast, male sex hormones such as testosterone seem to be immunosuppressive . Other hormones appear to regulate

4730-514: The respiratory tract . The flushing action of tears and urine also mechanically expels pathogens, while mucus secreted by the respiratory and gastrointestinal tract serves to trap and entangle microorganisms . Chemical barriers also protect against infection. The skin and respiratory tract secrete antimicrobial peptides such as the β- defensins . Enzymes such as lysozyme and phospholipase A2 in saliva , tears, and breast milk are also antibacterials . Vaginal secretions serve as

4840-399: The B cell surface and recognizes native (unprocessed) antigen without any need for antigen processing . Such antigens may be large molecules found on the surfaces of pathogens, but can also be small haptens (such as penicillin) attached to carrier molecule. Each lineage of B cell expresses a different antibody, so the complete set of B cell antigen receptors represent all the antibodies that

4950-505: The Democratic Republic of Congo . Central chimpanzees are considered highly intelligent apes . They are also highly social living in large groups and follow a male dominant hierarchy. The activity budgets of this chimpanzee subspecies changes depending on if they were in the wild or sanctuaries. They have been observed using tools, this could be to open nuts or using twigs to gain access to ants and termites. Central chimpanzees have

5060-587: The T cell's surface, such as CD40 ligand (also called CD154 ), which provide extra stimulatory signals typically required to activate antibody-producing B cells. Gamma delta T cells (γδ T cells) possess an alternative T-cell receptor (TCR) as opposed to CD4+ and CD8+ (αβ) T cells and share the characteristics of helper T cells, cytotoxic T cells and NK cells. The conditions that produce responses from γδ T cells are not fully understood. Like other 'unconventional' T cell subsets bearing invariant TCRs, such as CD1d -restricted natural killer T cells , γδ T cells straddle

5170-411: The ability to adapt to recognize pathogens more efficiently. Adaptive (or acquired) immunity creates an immunological memory leading to an enhanced response to subsequent encounters with that same pathogen. This process of acquired immunity is the basis of vaccination . Dysfunction of the immune system can cause autoimmune diseases , inflammatory diseases and cancer . Immunodeficiency occurs when

5280-473: The alphas of the group. This can be thought of like leaders of the group. This social hierarchy is well explained in a study done in 2018 by Jane Goodall institute. But in these groups of chimpanzees, females also have leading roles as alpha female groups. Although it is not probable that an alpha female will outrank an alpha male. It was found that chimpanzees split activity budget into four main categories. The search for food, socialising, moving and resting. It

5390-565: The antibody that recognizes this antigen. These antibodies circulate in blood plasma and lymph , bind to pathogens expressing the antigen and mark them for destruction by complement activation or for uptake and destruction by phagocytes . Antibodies can also neutralize challenges directly, by binding to bacterial toxins or by interfering with the receptors that viruses and bacteria use to infect cells. Newborn infants have no prior exposure to microbes and are particularly vulnerable to infection. Several layers of passive protection are provided by

5500-453: The body can manufacture. When B or T cells encounter their related antigens they multiply and many "clones" of the cells are produced that target the same antigen. This is called clonal selection . Both B cells and T cells carry receptor molecules that recognize specific targets. T cells recognize a "non-self" target, such as a pathogen, only after antigens (small fragments of the pathogen) have been processed and presented in combination with

5610-585: The body in pursuit of invading pathogens. Neutrophils are normally found in the bloodstream and are the most abundant type of phagocyte, representing 50% to 60% of total circulating leukocytes. During the acute phase of inflammation , neutrophils migrate toward the site of inflammation in a process called chemotaxis and are usually the first cells to arrive at the scene of infection. Macrophages are versatile cells that reside within tissues and produce an array of chemicals including enzymes, complement proteins , and cytokines. They can also act as scavengers that rid

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5720-440: The body of worn-out cells and other debris and as antigen-presenting cells (APCs) that activate the adaptive immune system. Dendritic cells are phagocytes in tissues that are in contact with the external environment; therefore, they are located mainly in the skin, nose, lungs, stomach, and intestines. They are named for their resemblance to neuronal dendrites , as both have many spine-like projections. Dendritic cells serve as

5830-654: The border between innate and adaptive immunity. On one hand, γδ T cells are a component of adaptive immunity as they rearrange TCR genes to produce receptor diversity and can also develop a memory phenotype. On the other hand, the various subsets are also part of the innate immune system, as restricted TCR or NK receptors may be used as pattern recognition receptors . For example, large numbers of human Vγ9/Vδ2 T cells respond within hours to common molecules produced by microbes, and highly restricted Vδ1+ T cells in epithelia respond to stressed epithelial cells. A B cell identifies pathogens when antibodies on its surface bind to

5940-776: The brakes on NK cells. Inflammation is one of the first responses of the immune system to infection. The symptoms of inflammation are redness, swelling, heat, and pain, which are caused by increased blood flow into tissue. Inflammation is produced by eicosanoids and cytokines , which are released by injured or infected cells. Eicosanoids include prostaglandins that produce fever and the dilation of blood vessels associated with inflammation and leukotrienes that attract certain white blood cells (leukocytes). Common cytokines include interleukins that are responsible for communication between white blood cells; chemokines that promote chemotaxis ; and interferons that have antiviral effects, such as shutting down protein synthesis in

6050-520: The cells die most migrate from the blood to the tissues, mainly the intestines and lungs, where pathogens are most likely to be encountered. Some monocytes leave the blood circulation and migrate to the muscles where they differentiate and become macrophages . These cells differentiate into two types: proliferative macrophages, which are responsible for increasing the number of stem cells and restorative macrophages, which are involved their maturing to muscle cells. The immune system, particularly

6160-428: The central chimpanzee be better adapted at climbing trees. Central chimpanzees live in social groups of around 66 individuals, on average this tends to be more than the group size of western chimpanzee counterparts. It was found that chimpanzees split activity budget into four main categories. In chimpanzees there exists male dominance within these social groups. Often the strongest and most aggressive males will become

6270-459: The chimpanzee genome project suggest that when ancestral chromosomes 2A and 2B fused to produce human chromosome 2, no genes were lost from the fused ends of 2A and 2B. At the site of fusion, there are approximately 150,000 base pairs of sequence not found in chimpanzee chromosomes 2A and 2B. Additional linked copies of the PGML/FOXD/CBWD genes exist elsewhere in the human genome, particularly near

6380-402: The close genetic relationship to gorillas , orangutans and humans , central chimpanzees are vulnerable to viruses that afflict humans, such as Ebola, the common cold , influenza , pneumonia , whooping cough , tuberculosis , measles , yellow fever , HIV and may contract other parasitological diseases such as schistosomiasis , filariasis , giardiasis , and salmonellosis . One of

6490-653: The components of the immune system are inactive. The ability of the immune system to respond to pathogens is diminished in both the young and the elderly , with immune responses beginning to decline at around 50 years of age due to immunosenescence . In developed countries , obesity , alcoholism , and drug use are common causes of poor immune function, while malnutrition is the most common cause of immunodeficiency in developing countries . Diets lacking sufficient protein are associated with impaired cell-mediated immunity, complement activity, phagocyte function, IgA antibody concentrations, and cytokine production. Additionally,

6600-589: The conditions in their environment, such as pH or available iron. As a result, the probability that pathogens will reach sufficient numbers to cause illness is reduced. Microorganisms or toxins that successfully enter an organism encounter the cells and mechanisms of the innate immune system. The innate response is usually triggered when microbes are identified by pattern recognition receptors , which recognize components that are conserved among broad groups of microorganisms, or when damaged, injured or stressed cells send out alarm signals, many of which are recognized by

6710-404: The different roles of the two types of T cell. A third, minor subtype are the γδ T cells that recognize intact antigens that are not bound to MHC receptors. The double-positive T cells are exposed to a wide variety of self-antigens in the thymus , in which iodine is necessary for its thymus development and activity. In contrast, the B cell antigen-specific receptor is an antibody molecule on

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6820-431: The formation of a membrane attack complex . The adaptive immune system evolved in early vertebrates and allows for a stronger immune response as well as immunological memory , where each pathogen is "remembered" by a signature antigen. The adaptive immune response is antigen-specific and requires the recognition of specific "non-self" antigens during a process called antigen presentation . Antigen specificity allows for

6930-458: The fruit availability is low, central chimpanzees are able to keep a high fruit intake. The central chimpanzees tend to stay in the vegetation to get their food source. In a study, it mentions that central chimpanzees and western lowland gorillas high fruit consumption overlap in many parts of Central Africa. But in most cases, central chimpanzees consumed more fruits in their diets (60%), where western lowland gorillas also consumed more leaves . This

7040-419: The functions of specialized cells (located in the thymus and bone marrow) is to present young lymphocytes with self antigens produced throughout the body and to eliminate those cells that recognize self-antigens , preventing autoimmunity. Common autoimmune diseases include Hashimoto's thyroiditis , rheumatoid arthritis , diabetes mellitus type 1 , and systemic lupus erythematosus . Hypersensitivity

7150-420: The generation of responses that are tailored to specific pathogens or pathogen-infected cells. The ability to mount these tailored responses is maintained in the body by "memory cells". Should a pathogen infect the body more than once, these specific memory cells are used to quickly eliminate it. The cells of the adaptive immune system are special types of leukocytes, called lymphocytes. B cells and T cells are

7260-527: The host cell. Growth factors and cytotoxic factors may also be released. These cytokines and other chemicals recruit immune cells to the site of infection and promote the healing of any damaged tissue following the removal of pathogens. The pattern-recognition receptors called inflammasomes are multiprotein complexes (consisting of an NLR, the adaptor protein ASC, and the effector molecule pro-caspase-1) that form in response to cytosolic PAMPs and DAMPs, whose function

7370-511: The human and chimpanzee lineages; many of these genes are involved in immune system defense against microbial disease (example: granulysin is protective against Mycobacterium tuberculosis ) or are targeted receptors of pathogenic microorganisms (example: Glycophorin C and Plasmodium falciparum ). By comparing human and chimpanzee genes to the genes of other mammals, it has been found that genes coding for transcription factors , such as forkhead-box P2 ( FOXP2 ), have often evolved faster in

7480-478: The human evolutionary lineage, two ancestral ape chromosomes fused at their telomeres , producing human chromosome 2 . There are nine other major chromosomal differences between chimpanzees and humans: chromosome segment inversions on human chromosomes 1 , 4 , 5 , 9 , 12 , 15 , 16 , 17 , and 18 . After the completion of the Human genome project , a common chimpanzee genome project was initiated. In December 2003,

7590-441: The human lineage compared to the ancestral great ape pattern. The protocadherin-beta gene cluster on chromosome 5 also shows evidence of possible positive selection. Results from the human and chimpanzee genome analyses should help in understanding some human diseases. Humans appear to have lost a functional Caspase 12 gene, which in other primates codes for an enzyme that may protect against Alzheimer's disease . The results of

7700-443: The human relative to chimpanzee; relatively small changes in these genes may account for the morphological differences between humans and chimpanzees. A set of 348 transcription factor genes code for proteins with an average of about 50 percent more amino acid changes in the human lineage than in the chimpanzee lineage. Six human chromosomal regions were found that may have been under particularly strong and coordinated selection during

7810-635: The immune system as well, most notably prolactin , growth hormone and vitamin D . Although cellular studies indicate that vitamin D has receptors and probable functions in the immune system, there is no clinical evidence to prove that vitamin D deficiency increases the risk for immune diseases or vitamin D supplementation lowers immune disease risk. A 2011 United States Institute of Medicine report stated that "outcomes related to ... immune functioning and autoimmune disorders , and infections ... could not be linked reliably with calcium or vitamin D intake and were often conflicting." The immune system

7920-588: The immune system is less active than normal, resulting in recurring and life-threatening infections. In humans, immunodeficiency can be the result of a genetic disease such as severe combined immunodeficiency , acquired conditions such as HIV / AIDS , or the use of immunosuppressive medication . Autoimmunity results from a hyperactive immune system attacking normal tissues as if they were foreign organisms. Common autoimmune diseases include Hashimoto's thyroiditis , rheumatoid arthritis , diabetes mellitus type 1 , and systemic lupus erythematosus . Immunology covers

8030-699: The individual's own cells, marking them for destruction. This is also called antibody-dependent (or cytotoxic) hypersensitivity, and is mediated by IgG and IgM antibodies. Immune complexes (aggregations of antigens, complement proteins, and IgG and IgM antibodies) deposited in various tissues trigger Type III hypersensitivity reactions. Type IV hypersensitivity (also known as cell-mediated or delayed type hypersensitivity ) usually takes between two and three days to develop. Type IV reactions are involved in many autoimmune and infectious diseases, but may also involve contact dermatitis . These reactions are mediated by T cells , monocytes , and macrophages . Inflammation

8140-425: The inflammatory response. They are most often associated with allergy and anaphylaxis . Basophils and eosinophils are related to neutrophils. They secrete chemical mediators that are involved in defending against parasites and play a role in allergic reactions, such as asthma . Innate lymphoid cells (ILCs) are a group of innate immune cells that are derived from common lymphoid progenitor and belong to

8250-497: The initiation of Th1 immune responses. During wake periods, differentiated effector cells, such as cytotoxic natural killer cells and cytotoxic T lymphocytes, peak to elicit an effective response against any intruding pathogens. Anti-inflammatory molecules, such as cortisol and catecholamines , also peak during awake active times. Inflammation would cause serious cognitive and physical impairments if it were to occur during wake times, and inflammation may occur during sleep times due to

8360-437: The innate and adaptive immune responses and help determine which immune responses the body makes to a particular pathogen. These cells have no cytotoxic activity and do not kill infected cells or clear pathogens directly. They instead control the immune response by directing other cells to perform these tasks. Helper T cells express T cell receptors that recognize antigen bound to Class II MHC molecules. The MHC:antigen complex

8470-886: The innate component, plays a decisive role in tissue repair after an insult . Key actors include macrophages and neutrophils , but other cellular actors, including γδ T cells , innate lymphoid cells (ILCs), and regulatory T cells (Tregs), are also important. The plasticity of immune cells and the balance between pro-inflammatory and anti-inflammatory signals are crucial aspects of efficient tissue repair. Immune components and pathways are involved in regeneration as well, for example in amphibians such as in axolotl limb regeneration . According to one hypothesis, organisms that can regenerate ( e.g. , axolotls ) could be less immunocompetent than organisms that cannot regenerate. Failures of host defense occur and fall into three broad categories: immunodeficiencies, autoimmunity, and hypersensitivities. Immunodeficiencies occur when one or more of

8580-433: The innate immune system have pattern recognition receptors, which detect infection or cell damage, inside. Three major classes of these "cytosolic" receptors are NOD–like receptors , RIG (retinoic acid-inducible gene)-like receptors , and cytosolic DNA sensors. Some leukocytes (white blood cells) act like independent, single-celled organisms and are the second arm of the innate immune system. The innate leukocytes include

8690-473: The innate response, vertebrates possess a second layer of protection, the adaptive immune system , which is activated by the innate response. Here, the immune system adapts its response during an infection to improve its recognition of the pathogen. This improved response is then retained after the pathogen has been eliminated, in the form of an immunological memory , and allows the adaptive immune system to mount faster and stronger attacks each time this pathogen

8800-423: The lifetime of an animal, these memory cells remember each specific pathogen encountered and can mount a strong response if the pathogen is detected again. T-cells recognize pathogens by small protein-based infection signals, called antigens, that bind to directly to T-cell surface receptors. B-cells use the protein, immunoglobulin, to recognize pathogens by their antigens. This is "adaptive" because it occurs during

8910-415: The lifetime of an individual as an adaptation to infection with that pathogen and prepares the immune system for future challenges. Immunological memory can be in the form of either passive short-term memory or active long-term memory. The immune system is involved in many aspects of physiological regulation in the body. The immune system interacts intimately with other systems, such as the endocrine and

9020-459: The loss of the thymus at an early age through genetic mutation or surgical removal results in severe immunodeficiency and a high susceptibility to infection. Immunodeficiencies can also be inherited or ' acquired '. Severe combined immunodeficiency is a rare genetic disorder characterized by the disturbed development of functional T cells and B cells caused by numerous genetic mutations. Chronic granulomatous disease , where phagocytes have

9130-471: The major causes of central chimpanzee deaths is caused by heart disease. This sudden cardiac death is caused by fatal arrhythmia. This is when the heart has an unorganised, erratic firing of the impulse which impact the ventricles. But in central chimpanzees, the post mortem analysis of this cause of death is complex to observe. The causes related to these spontaneous heart failures were observed in this study. They saw different reasons which lead to this disease

9240-454: The major types of lymphocytes and are derived from hematopoietic stem cells in the bone marrow . B cells are involved in the humoral immune response , whereas T cells are involved in cell-mediated immune response . Killer T cells only recognize antigens coupled to Class I MHC molecules, while helper T cells and regulatory T cells only recognize antigens coupled to Class II MHC molecules. These two mechanisms of antigen presentation reflect

9350-509: The microbe, they activate their protease activity, which in turn activates other complement proteases, and so on. This produces a catalytic cascade that amplifies the initial signal by controlled positive feedback . The cascade results in the production of peptides that attract immune cells, increase vascular permeability , and opsonize (coat) the surface of a pathogen, marking it for destruction. This deposition of complement can also kill cells directly by disrupting their plasma membrane via

9460-408: The milieu of hormones produced at this time (leptin, pituitary growth hormone, and prolactin) supports the interactions between APCs and T-cells, a shift of the T h 1/T h 2 cytokine balance towards one that supports T h 1, an increase in overall T h cell proliferation, and naïve T cell migration to lymph nodes. This is also thought to support the formation of long-lasting immune memory through

9570-484: The more virulent and easily transmitted, and is the source of the majority of HIV infections throughout the world; HIV-2 is largely confined to West Africa. Both types originated in West and Central Africa. HIV-1 has evolved from a simian immunodeficiency virus (SIVcpz) found in the central chimpanzee. Kinshasa , in the Democratic Republic of Congo, has the greatest genetic diversity of HIV-1 so far discovered, suggesting that

9680-558: The most prevalent ones were renal failure and trauma. Since the 1990s, there have been multiple outbreaks of Ebola in great apes especially central chimpanzees all over the African continent, this has had a great effect on the population numbers. It had strong impacts on the central chimpanzees and western lowland gorillas. This virus spread to central chimpanzees but spread to western chimpanzee species. Ebola also spread to western lowland gorillas and even to humans. In 1994, an outbreak of Ebola

9790-412: The mother. During pregnancy, a particular type of antibody, called IgG , is transported from mother to baby directly through the placenta , so human babies have high levels of antibodies even at birth, with the same range of antigen specificities as their mother. Breast milk or colostrum also contains antibodies that are transferred to the gut of the infant and protect against bacterial infections until

9900-462: The negative consequences of sleep deprivation, sleep and the intertwined circadian system have been shown to have strong regulatory effects on immunological functions affecting both innate and adaptive immunity. First, during the early slow-wave-sleep stage, a sudden drop in blood levels of cortisol , epinephrine , and norepinephrine causes increased blood levels of the hormones leptin , pituitary growth hormone , and prolactin . These signals induce

10010-506: The newborn can synthesize its own antibodies. This is passive immunity because the fetus does not actually make any memory cells or antibodies—it only borrows them. This passive immunity is usually short-term, lasting from a few days up to several months. In medicine, protective passive immunity can also be transferred artificially from one individual to another. When B cells and T cells are activated and begin to replicate, some of their offspring become long-lived memory cells. Throughout

10120-645: The number is more likely between 47,000 and 78,000 The central chimpanzee only has large, robust populations where large amounts of forest are left undisturbed; smaller, isolated populations also remain. According to the IUCN, decline in the central chimpanzee population is expected to continue for another 30 to 40 years. Major threats to central chimpanzee populations include Ebola virus disease , poaching for bushmeat , and habitat destruction . The IUCN attributes this to increasing human presence (agriculture, de-forestation, development) and political instability. Due to

10230-475: The organism's own healthy tissue . Many species have two major subsystems of the immune system. The innate immune system provides a preconfigured response to broad groups of situations and stimuli. The adaptive immune system provides a tailored response to each stimulus by learning to recognize molecules it has previously encountered. Both use molecules and cells to perform their functions. Nearly all organisms have some kind of immune system. Bacteria have

10340-528: The p end of chromosome 9 . This suggests that a copy of these genes may have been added to the end of the ancestral 2A or 2B prior to the fusion event. It remains to be determined if these inserted genes confer a selective advantage. Central chimpanzee The central chimpanzee or the tschego ( Pan troglodytes troglodytes ) is a subspecies of chimpanzee . It can be found in Central Africa , mostly in Gabon , Cameroon , Republic of Congo and

10450-413: The past 250,000 years. These regions contain at least one marker allele that seems unique to the human lineage while the entire chromosomal region shows lower than normal genetic variation. This pattern suggests that one or a few strongly selected genes in the chromosome region may have been preventing the random accumulation of neutral changes in other nearby genes. One such region on chromosome 7 contains

10560-446: The population of them this include heart issues but also different types of viruses . Central chimpanzees are strong vector carrying . These viruses spread inter species to other species and sometimes to humans. These viruses include the Ebola virus . However, there are also human immunodeficiency viruses (HIV) at the origin which have links to central chimpanzees. Pan is derived from

10670-497: The population of western lowland gorillas and central chimpanzees have died. In another study done about the 1996 outbreak that happened in North Eastern Gabbon, showed that the population of central chimpanzees had a high risk of death if exposed to this virus. Out of the 37 central chimpanzees that were contaminated, 27 were found dead. This threat from Ebola pandemics combined with conservation and habitat destruction pose

10780-434: The presence of melatonin . Inflammation causes a great deal of oxidative stress and the presence of melatonin during sleep times could actively counteract free radical production during this time. Physical exercise has a positive effect on the immune system and depending on the frequency and intensity, the pathogenic effects of diseases caused by bacteria and viruses are moderated. Immediately after intense exercise there

10890-532: The same receptors as those that recognize pathogens. Innate immune defenses are non-specific, meaning these systems respond to pathogens in a generic way. This system does not confer long-lasting immunity against a pathogen. The innate immune system is the dominant system of host defense in most organisms, and the only one in plants. Cells in the innate immune system use pattern recognition receptors to recognize molecular structures that are produced by pathogens. They are proteins expressed, mainly, by cells of

11000-486: The seeds in the gut that aid the germination of seeds. These factors combined make them very effective seed dispersers and a circuital element to the ecological rainforest environment. Central chimpanzees are opportunistic frugivores . Compared to western lowland gorillas and Bornean orangutans who are generalized folivores and frugivores, central chimpanzees are specialised frugivores. Central chimpanzees diet consists mainly of fruits in their diets. During months were

11110-406: The sequence differences between humans and chimps. Single-base-pair substitutions account for about half as much genetic change as does gene duplication. Typical human and chimpanzee homologs of proteins differ in only an average of two amino acids . About 30 percent of all human proteins are identical in sequence to the corresponding chimpanzee protein. As mentioned above, gene duplications are

11220-401: The spread of Ebola within central chimpanzees. Through this experiment the central chimpanzees developed an immune response that was thought to have developed antibodies. This study was not conclusive. In 2015, the central chimpanzees were place on the endangered list so further experiments had to halted. Two types of human immunodeficiency virus (HIV) infect humans: HIV-1 and HIV-2. HIV-1 is

11330-447: The study of all aspects of the immune system. The immune system protects its host from infection with layered defenses of increasing specificity. Physical barriers prevent pathogens such as bacteria and viruses from entering the organism. If a pathogen breaches these barriers, the innate immune system provides an immediate, but non-specific response. Innate immune systems are found in all animals . If pathogens successfully evade

11440-503: The target cell's plasma membrane , allowing ions , water and toxins to enter. The entry of another toxin called granulysin (a protease) induces the target cell to undergo apoptosis . T cell killing of host cells is particularly important in preventing the replication of viruses. T cell activation is tightly controlled and generally requires a very strong MHC/antigen activation signal, or additional activation signals provided by "helper" T cells (see below). Helper T cells regulate both

11550-479: The typical difference between pairs of humans. Another study showed that patterns of DNA methylation, which are a known regulation mechanism for gene expression, differ in the prefrontal cortex of humans versus chimpanzees, and implicated this difference in the evolutionary divergence of the two species. An analysis of the chimpanzee genome sequence was published in Nature on September 1, 2005, in an article produced by

11660-552: The virus has been there longer than anywhere else. HIV-2 crossed species from a different strain of SIV, found in the sooty mangabey , monkeys in Guinea-Bissau . Immune system The immune system is a network of biological systems that protects an organism from diseases . It detects and responds to a wide variety of pathogens , from viruses to bacteria , as well as cancer cells , parasitic worms , and also objects such as wood splinters , distinguishing them from

11770-631: Was done to control intestinal parasites. They are known to be occasional predators, which is the red colobus monkey . Although this is a rare occurrence, this does occur in Central Africa. The population being in decline the occurrence of Central Africa is diminishing. The 2007 International Union for Conservation of Nature (IUCN) Red List of Threatened Species classifies the central chimpanzee as endangered . In 1988, they were considered " vulnerable ", but have been considered "endangered" since at least 1996. The World Wildlife Fund (WWF) estimates there are as many as 115,000 individuals alive, but that

11880-453: Was found that in the wild they spent 50% of their time in search of food. The rest of the time was then spent equally socialising, moving and resting. Studies which were done all over the African continent showed the same trend for all chimpanzee subspecies. The social groups will break up into smaller groups called parties which mostly consist of males. They will control a certain area, this could lead to inter species fights and killings. This

11990-518: Was found to be one of the leading causes of death of chimpanzees in the Gombe stream research center. Central chimpanzees have a key role in the ecology and environmental role. In the forest central chimpanzees are seed dispersers . As since the majority of their diet consist of fruits , they are not able to digest the seeds, so when they defecate these seeds are dispersed on the forest floor . The central chimpanzees have been found to provide treatments to

12100-513: Was recorded in Nature. During the time of a couple weeks, 25% of the central chimpanzee population disappeared in this rainforest, this amounted to 43 wild central chimpanzees that died. They were found in the Tai National Park. The spread of Ebola is commonly inter species especially between western lowland gorillas and central chimpanzees. Since the 1990s, it is estimated that about one third of

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