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Shewanella

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An organism is defined in a medical dictionary as any living thing that functions as an individual . Such a definition raises more problems than it solves, not least because the concept of an individual is also difficult. Many criteria, few of them widely accepted, have been proposed to define what an organism is. Among the most common is that an organism has autonomous reproduction , growth , and metabolism . This would exclude viruses , despite the fact that they evolve like organisms. Other problematic cases include colonial organisms ; a colony of eusocial insects is organised adaptively, and has germ-soma specialisation , with some insects reproducing, others not, like cells in an animal's body. The body of a siphonophore , a jelly-like marine animal, is composed of organism-like zooids , but the whole structure looks and functions much like an animal such as a jellyfish , the parts collaborating to provide the functions of the colonial organism.

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71-477: Shewanella is the sole genus included in the marine bacteria family Shewanellaceae . Some species within it were formerly classed as Alteromonas . Shewanella consists of facultatively anaerobic Gram-negative rods, most of which are found in extreme aquatic habitats where the temperature is very low and the pressure is very high. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. Shewanella chilikensis ,

142-464: A nucleus and rarely harbour membrane-bound organelles . Although the term bacteria traditionally included all prokaryotes, the scientific classification changed after the discovery in the 1990s that prokaryotes consist of two very different groups of organisms that evolved from an ancient common ancestor. These evolutionary domains are called Bacteria and Archaea . The ancestors of modern bacteria were unicellular microorganisms that were

213-752: A direction that points with varying angles into the ocean depths, and away from the generally more oxygen rich surface. Aerotaxis is the response by which bacteria migrate to an optimal oxygen concentration in an oxygen gradient. Various experiments have clearly shown that magnetotaxis and aerotaxis work in conjunction in magnetotactic bacteria. It has been shown that, in water droplets, one-way swimming magnetotactic bacteria can reverse their swimming direction and swim backwards under reducing conditions (less than optimal oxygen concentration ), as opposed to oxic conditions (greater than optimal oxygen concentration). Organism The evolutionary biologists David Queller and Joan Strassmann state that "organismality",

284-428: A eukaryotic algae that developed into a "second-generation" plastid. This is known as secondary endosymbiosis . Bacteria grow to a fixed size and then reproduce through binary fission , a form of asexual reproduction . Under optimal conditions, bacteria can grow and divide extremely rapidly, and bacterial populations can double as quickly as every 9.8 minutes. Pelagibacter ubique and its relatives may be

355-569: A few enzymes and molecules like those in living organisms, they have no metabolism of their own; they cannot synthesize the organic compounds from which they are formed. In this sense, they are similar to inanimate matter. Viruses have their own genes , and they evolve . Thus, an argument that viruses should be classed as living organisms is their ability to undergo evolution and replicate through self-assembly. However, some scientists argue that viruses neither evolve nor self-reproduce. Instead, viruses are evolved by their host cells, meaning that there

426-1077: A few archaea have very strange shapes, such as the flat and square-shaped cells of Haloquadratum walsbyi . Despite this morphological similarity to bacteria, archaea possess genes and several metabolic pathways that are more closely related to those of eukaryotes, notably the enzymes involved in transcription and translation . Other aspects of archaeal biochemistry are unique, such as their reliance on ether lipids in their cell membranes , such as archaeols . Archaea use more energy sources than eukaryotes: these range from organic compounds , such as sugars, to ammonia , metal ions or even hydrogen gas . Salt-tolerant archaea (the Haloarchaea ) use sunlight as an energy source, and other species of archaea fix carbon ; however, unlike plants and cyanobacteria , no known species of archaea does both. Archaea reproduce asexually by binary fission , fragmentation , or budding ; unlike bacteria and eukaryotes, no known species forms spores . Archaea are particularly numerous in

497-460: A minor genetic change in a single molecule called GK-PID may have allowed organisms to go from a single cell organism to one of many cells. Soon after the emergence of these first multicellular organisms, a remarkable amount of biological diversity appeared over a span of about 10 million years, in an event called the Cambrian explosion . Here, the majority of types of modern animals appeared in

568-417: A particular bacterial species. However, gene sequences can be used to reconstruct the bacterial phylogeny , and these studies indicate that bacteria diverged first from the archaeal/eukaryotic lineage. Bacteria were also involved in the second great evolutionary divergence, that of the archaea and eukaryotes. Here, eukaryotes resulted from the entering of ancient bacteria into endosymbiotic associations with

639-400: A rotary motor, and the eukaryotic flagella use a complex sliding filament system. Eukaryotic flagella are ATP-driven , while prokaryotic flagella can be ATP-driven (archaea) or proton-driven (bacteria). Twitching motility is a form of crawling bacterial motility used to move over surfaces. Twitching is mediated by the activity of hair-like filaments called type IV pili which extend from

710-531: A species of the genus Shewanella commonly found in the marine sponges of Saint Martin's Island of the Bay of Bengal , Bangladesh . Shewanella oneidensis MR-1 is a widely used laboratory model to study anaerobic respiration of metals and other anaerobic extracellular electron acceptors, and for teaching about microbial electrogenesis and microbial fuel cells . Colony, morphological, physiological, and biochemical characteristics of Shewanella species are shown in

781-549: A stab tube, they only grow along the stab line. If the bacteria are mobile, the line will appear diffuse and extend into the medium. Magnetotactic bacteria orient themselves along the magnetic field lines of Earth's magnetic field . This alignment is believed to aid these organisms in reaching regions of optimal oxygen concentration. To perform this task, these bacteria have biomineralised organelles called magnetosomes that contain magnetic crystals . The biological phenomenon of microorganisms tending to move in response to

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852-457: A useful tool for bioremediation. Specifically, Shewanella oneidensis strain MR-1 is often used to clean up contaminated nuclear weapon manufacturing sites. Shewanella also contributes to the biogeochemical circulation of minerals. Members of this genus are widely distributed in aquatic habitats, from the deep sea to the shallow Antarctic Ocean. Its diverse habitats, coupled to its ability to reduce

923-570: A variety of metals, makes the genus critical for the cycling of minerals. For instance, under aerobic conditions, various species of Shewanella are capable of oxidizing manganese. When conditions are changed, the same species can reduce the manganese oxide products. Hence, since Shewanella can both oxidize and reduce manganese, it is critical to the cycling of manganese. Marine bacteria Marine prokaryotes are marine bacteria and marine archaea . They are defined by their habitat as prokaryotes that live in marine environments , that is, in

994-445: Is a microorganism such as a protist , bacterium , or archaean , composed of a single cell , which may contain functional structures called organelles . A multicellular organism such as an animal , plant , fungus , or alga is composed of many cells, often specialised. A colonial organism such as a siphonophore is a being which functions as an individual but is composed of communicating individuals. A superorganism

1065-401: Is a teleonomic or goal-seeking behaviour that enables them to correct errors of many kinds so as to achieve whatever result they are designed for. Such behaviour is reminiscent of intelligent action by organisms; intelligence is seen as an embodied form of cognition . All organisms that exist today possess a self-replicating informational molecule (genome), and such an informational molecule

1136-741: Is a colony, such as of ants , consisting of many individuals working together as a single functional or social unit . A mutualism is a partnership of two or more species which each provide some of the needs of the other. A lichen consists of fungi and algae or cyanobacteria , with a bacterial microbiome ; together, they are able to flourish as a kind of organism, the components having different functions, in habitats such as dry rocks where neither could grow alone. The evolutionary biologists David Queller and Joan Strassmann state that "organismality" has evolved socially, as groups of simpler units (from cells upwards) came to cooperate without conflicts. They propose that cooperation should be used as

1207-445: Is a rapid (2–10 μm/s) and coordinated translocation of a bacterial population across solid or semi-solid surfaces, and is an example of bacterial multicellularity and swarm behaviour . Swarming motility was first reported in 1972 by Jorgen Henrichsen. Non-motile species lack the ability and structures that would allow them to propel themselves, under their own power, through their environment. When non-motile bacteria are cultured in

1278-448: Is a species of marine archaea discovered in 2002 in a hydrothermal vent . It is a thermophile that grows in temperatures at about 80 °C (176 °F). Nanoarchaeum appears to be an obligate symbiont on the archaeon Ignicoccus . It must stay in contact with the host organism to survive since Nanoarchaeum equitans cannot synthesize lipids but obtains them from its host. Its cells are only 400 nm in diameter, making it one of

1349-535: Is an argument for viewing viruses as cellular organisms. Some researchers perceive viruses not as virions alone, which they believe are just spores of an organism, but as a virocell - an ontologically mature viral organism that has cellular structure. Such virus is a result of infection of a cell and shows all major physiological properties of other organisms: metabolism , growth, and reproduction , therefore, life in its effective presence. The philosopher Jack A. Wilson examines some boundary cases to demonstrate that

1420-585: Is far more varied than that of eukaryotes, leading to many highly distinct prokaryotic types. For example, in addition to using photosynthesis or organic compounds for energy, as eukaryotes do, marine prokaryotes may obtain energy from inorganic compounds such as hydrogen sulfide . This enables marine prokaryotes to thrive as extremophiles in harsh environments as cold as the ice surface of Antarctica, studied in cryobiology , as hot as undersea hydrothermal vents , or in high saline conditions as ( halophiles ). Some marine prokaryotes live symbiotically in or on

1491-472: Is likely intrinsic to life. Thus, the earliest organisms also presumably possessed a self-replicating informational molecule ( genome ), perhaps RNA or an informational molecule more primitive than RNA. The specific nucleotide sequences in all currently extant organisms contain information that functions to promote survival, reproduction , and the ability to acquire resources necessary for reproduction, and sequences with such functions probably emerged early in

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1562-458: Is outdated. Archaeal cells have unique properties separating them from the other two domains of life, Bacteria and Eukaryota . The Archaea are further divided into multiple recognized phyla . Classification is difficult because the majority have not been isolated in the laboratory and have only been detected by analysis of their nucleic acids in samples from their environment. Bacteria and archaea are generally similar in size and shape, although

1633-501: The Roseobacter genus play important roles in marine biogeochemical cycles and climate change, processing a significant portion of the total carbon in the marine environment. They form symbiotic relationships which allow them to degrade aromatic compounds and uptake trace metals. They are widely used in aquaculture and quorum sensing. During algal blooms, 20–30% of the prokaryotic community are Roseobacter. The largest known bacterium,

1704-536: The Ancient Greek ὀργανισμός , derived from órganon , meaning instrument, implement, tool, organ of sense or apprehension) first appeared in the English language in the 1660s with the now-obsolete meaning of an organic structure or organization. It is related to the verb "organize". In his 1790 Critique of Judgment , Immanuel Kant defined an organism as "both an organized and a self-organizing being". Among

1775-412: The first forms of life to appear on Earth, about 4 billion years ago. For about 3 billion years, most organisms were microscopic, and bacteria and archaea were the dominant forms of life. Although bacterial fossils exist, such as stromatolites , their lack of distinctive morphology prevents them from being used to examine the history of bacterial evolution, or to date the time of origin of

1846-405: The photosynthesis that occurs in the ocean, as well as significant cycling of carbon and other nutrients . Prokaryotes live throughout the biosphere . In 2018 it was estimated the total biomass of all prokaryotes on the planet was equivalent to 77 billion tonnes of carbon (77 Gt C). This is made up of 7 Gt C for archaea and 70 Gt C for bacteria. These figures can be contrasted with

1917-409: The saltwater of seas or oceans or the brackish water of coastal estuaries . All cellular life forms can be divided into prokaryotes and eukaryotes. Eukaryotes are organisms whose cells have a nucleus enclosed within membranes , whereas prokaryotes are the organisms that do not have a nucleus enclosed within a membrane. The three-domain system of classifying life adds another division:

1988-642: The "defining trait" of an organism. Samuel Díaz‐Muñoz and colleagues (2016) accept Queller and Strassmann's view that organismality can be measured wholly by degrees of cooperation and of conflict. They state that this situates organisms in evolutionary time, so that organismality is context dependent. They suggest that highly integrated life forms, which are not context dependent, may evolve through context-dependent stages towards complete unification. Viruses are not typically considered to be organisms, because they are incapable of autonomous reproduction , growth , metabolism , or homeostasis . Although viruses have

2059-490: The Earth's atmosphere. It is possibly the most plentiful genus on Earth: a single millilitre of surface seawater may contain 100,000 cells or more. Originally, biologists classified cyanobacteria as an algae, and referred to it as "blue-green algae". The more recent view is that cyanobacteria are bacteria, and hence are not even in the same Kingdom as algae. Most authorities exclude all prokaryotes , and hence cyanobacteria from

2130-565: The Table below. Note: + = Positive; – =Negative Currently known Shewanella species are heterotrophic facultative anaerobes. In the absence of oxygen, members of this genus possess capabilities allowing the use of a variety of other electron acceptors for respiration. These include thiosulfate, sulfite, or elemental sulfur, as well as fumarate. Marine species have demonstrated an ability to use arsenic as an electron acceptor as well. Some members of this species, most notably Shewanella oneidensis , have

2201-419: The ability to respire through a wide range of metal species, including manganese, chromium, uranium, and iron. Reduction of iron and manganese through Shewanella respiration has been shown to involve extracellular electron transfer through the employment of bacterial nanowires , extensions of the outer membrane. The discovery of some of the respiratory capabilities possessed by members of this genus has opened

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2272-606: The ancestors of eukaryotic cells, which were themselves possibly related to the Archaea . This involved the engulfment by proto-eukaryotic cells of alphaproteobacterial symbionts to form either mitochondria or hydrogenosomes , which are still found in all known Eukarya. Later on, some eukaryotes that already contained mitochondria also engulfed cyanobacterial-like organisms. This led to the formation of chloroplasts in algae and plants. There are also some algae that originated from even later endosymbiotic events. Here, eukaryotes engulfed

2343-459: The archaea and the bacteria, while the eukaryotes become a domain in their own right. The key difference from earlier classifications is the splitting of archaea from bacteria. The earliest evidence for life on earth comes from biogenic carbon signatures and stromatolite fossils discovered in 3.7 billion-year-old rocks. In 2015, possible "remains of biotic life " were found in 4.1 billion-year-old rocks. In 2017 putative evidence of possibly

2414-428: The base of the flagellum. The direction of rotation of the flagella in bacteria comes from the occupancy of the proton channels along the perimeter of the flagellar motor. Some eukaryotic cells also use flagella—and they can be found in some protists and plants as well as animal cells. Eukaryotic flagella are complex cellular projections that lash back and forth, rather than in a circular motion. Prokaryotic flagella use

2485-426: The bodies of other marine organisms. Motility is the ability of an organism to move independently, using metabolic energy. Prokaryotes, both bacteria and archaea, primarily use flagella for locomotion. The rotary motor model used by bacteria uses the protons of an electrochemical gradient in order to move their flagella. Torque in the flagella of bacteria is created by particles that conduct protons around

2556-474: The cell's exterior, bind to surrounding solid substrates and retract, pulling the cell forwards in a manner similar to the action of a grappling hook . The name twitching motility is derived from the characteristic jerky and irregular motions of individual cells when viewed under the microscope. Gliding motility is a type of translocation that is independent of propulsive structures such as flagella or pili . Gliding allows microorganisms to travel along

2627-678: The concept of organism is not sharply defined. In his view, sponges , lichens , siphonophores , slime moulds , and eusocial colonies such as those of ants or naked molerats , all lie in the boundary zone between being definite colonies and definite organisms (or superorganisms). Scientists and bio-engineers are experimenting with different types of synthetic organism , from chimaeras composed of cells from two or more species, cyborgs including electromechanical limbs, hybrots containing both electronic and biological elements, and other combinations of systems that have variously evolved and been designed. An evolved organism takes its form by

2698-476: The criteria that have been proposed for being an organism are: Other scientists think that the concept of the organism is inadequate in biology; that the concept of individuality is problematic; and from a philosophical point of view, question whether such a definition is necessary. Problematic cases include colonial organisms : for instance, a colony of eusocial insects fulfills criteria such as adaptive organisation and germ-soma specialisation. If so,

2769-410: The dead bacterial cells stimulate fresh bacterial and algal growth. Viral activity may also contribute to the biological pump , the process whereby carbon is sequestered in the deep ocean. Bacteria constitute a large domain of prokaryotic microorganisms . Typically a few micrometres in length, bacteria have a number of shapes, ranging from spheres to rods and spirals. Bacteria were among

2840-523: The definition of algae. Other marine bacteria, apart from cyanobacteria, are ubiquitous or can play important roles in the ocean. These include the opportunistic copiotroph , Alteromonas macleodii . The archaea (Greek for ancient ) constitute a domain and kingdom of single-celled microorganisms . These microbes are prokaryotes , meaning they have no cell nucleus or any other membrane-bound organelles in their cells. Archaea were initially classified as bacteria , but this classification

2911-752: The dominant form of life in the early Archean Eon and many of the major steps in early evolution are thought to have taken place in this environment. The evolution of photosynthesis around 3.5 Ga resulted in a buildup of its waste product oxygen in the atmosphere, leading to the great oxygenation event beginning around 2.4 Ga. The earliest evidence of eukaryotes dates from 1.85 Ga, and while they may have been present earlier, their diversification accelerated when they started using oxygen in their metabolism . Later, around 1.7 Ga, multicellular organisms began to appear, with differentiated cells performing specialised functions. A stream of airborne microorganisms, including prokaryotes, circles

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2982-410: The door to possible applications for these bacteria. The metal-reducing capabilities can potentially be applied to bioremediation of uranium-contaminated groundwater, with the reduced form of uranium produced being easier to remove from water than the more soluble uranium oxide. Scientists researching the creation of microbial fuel cells, designs that use bacteria to induce a current, have also made use of

3053-478: The earlier molten Hadean Eon. Microbial mat fossils have been found in 3.48 billion-year-old sandstone in Western Australia . Past species have also left records of their evolutionary history. Fossils, along with the comparative anatomy of present-day organisms, constitute the morphological, or anatomical, record. By comparing the anatomies of both modern and extinct species, paleontologists can infer

3124-692: The environment's magnetic characteristics is known as magnetotaxis . However, this term is misleading in that every other application of the term taxis involves a stimulus-response mechanism. In contrast to the magnetoreception of animals, the bacteria contain fixed magnets that force the bacteria into alignment—even dead cells are dragged into alignment, just like a compass needle. Marine environments are generally characterized by low concentrations of nutrients kept in steady or intermittent motion by currents and turbulence. Marine bacteria have developed strategies, such as swimming and using directional sensing–response systems, to migrate towards favorable places in

3195-434: The estimate for the total biomass for animals on the planet, which is about 2 Gt C, and the total biomass of humans, which is 0.06 Gt C. This means archaea collectively have over 100 times the collective biomass of humans, and bacteria over 1000 times. There is no clear evidence of life on Earth during the first 600 million years of its existence. When life did arrive, it was dominated for 3,200 million years by

3266-422: The evolution of life. It is also likely that survival sequences present early in the evolution of organisms included sequences that facilitate the avoidance of damage to the self-replicating molecule and promote the capability to repair such damages that do occur. Repair of some of the genome damages in these early organisms may have involved the capacity to use undamaged information from another similar genome by

3337-483: The first life forms to appear on Earth , and are present in most of its habitats . Bacteria inhabit soil, water, acidic hot springs , radioactive waste , and the deep portions of Earth's crust . Bacteria also live in symbiotic and parasitic relationships with plants and animals. Once regarded as plants constituting the class Schizomycetes , bacteria are now classified as prokaryotes . Unlike cells of animals and other eukaryotes , bacterial cells do not contain

3408-564: The formation of chloroplasts in algae and plants. The history of life was that of the unicellular prokaryotes and eukaryotes until about 610 million years ago when multicellular organisms began to appear in the oceans in the Ediacaran period. The evolution of multicellularity occurred in multiple independent events, in organisms as diverse as sponges , brown algae , cyanobacteria , slime moulds and myxobacteria . In 2016 scientists reported that, about 800 million years ago,

3479-643: The fossil record, as well as unique lineages that subsequently became extinct. Various triggers for the Cambrian explosion have been proposed, including the accumulation of oxygen in the atmosphere from photosynthesis. The words prokaryote and eukaryote come from the Greek where pro means "before", eu means "well" or "true", and karyon means "nut", "kernel" or "nucleus". So etymologically, prokaryote means "before nucleus" and eukaryote means "true nucleus". The division of life forms between prokaryotes and eukaryotes

3550-472: The lineages of those species. However, this approach is most successful for organisms that had hard body parts, such as shells, bones or teeth. Further, as prokaryotes such as bacteria and archaea share a limited set of common morphologies, their fossils do not provide information on their ancestry. Prokaryotes inhabited the Earth from approximately 3–4 billion years ago. No obvious changes in morphology or cellular organisation occurred in these organisms over

3621-543: The marine Thiomargarita namibiensis , can be visible to the naked eye and sometimes attains 0.75 mm (750 μm). Cyanobacteria were the first organisms to evolve an ability to turn sunlight into chemical energy. They form a phylum (division) of bacteria which range from unicellular to filamentous and include colonial species . They are found almost everywhere on earth: in damp soil, in both freshwater and marine environments, and even on Antarctic rocks. In particular, some species occur as drifting cells floating in

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3692-455: The marine prokaryotes. More complex life, in the form of crown eukaryotes , did not appear until the Cambrian explosion a mere 500 million years ago. The Earth is about 4.54 billion years old. The earliest undisputed evidence of life on Earth dates from at least 3.5 billion years ago, during the Eoarchean Era after a geological crust started to solidify following

3763-614: The metal reducing capabilities some species of Shewanella possess as a part of their metabolic repertoire. One of the roles that the genus Shewanella has in the environment is bioremediation . Shewanella species have great metabolic versatility; they can reduce various electron acceptors. Some of the electron acceptors they use are toxic substances and heavy metals, which often become less toxic after being reduced. Examples of metals that Shewanella are capable of reducing and degrading include uranium, chromium, and iron. Its ability to decrease toxicity of various substances makes Shewanella

3834-422: The most abundant microorganisms in the ocean, and it has been claimed that they are possibly the most abundant bacteria in the world. They make up about 25% of all microbial plankton cells, and in the summer they may account for approximately half the cells present in temperate ocean surface water. The total abundance of P. ubique and relatives is estimated to be about 2 × 10 microbes. However, it

3905-405: The near-extinction of oxygen-intolerant organisms , a dramatic change which redirected the evolution of the major animal and plant species. The tiny (0.6   μm ) marine cyanobacterium Prochlorococcus , discovered in 1986, forms today an important part of the base of the ocean food chain and accounts for much of the photosynthesis of the open ocean and an estimated 20% of the oxygen in

3976-453: The next few billion years. The eukaryotic cells emerged between 1.6 and 2.7 billion years ago. The next major change in cell structure came when bacteria were engulfed by eukaryotic cells, in a cooperative association called endosymbiosis . The engulfed bacteria and the host cell then underwent coevolution, with the bacteria evolving into either mitochondria or hydrogenosomes . Another engulfment of cyanobacterial -like organisms led to

4047-431: The nutrient gradients. Magnetotactic bacteria utilize Earth's magnetic field to facilitate downward swimming into the oxic–anoxic interface, which is the most favorable place for their persistence and proliferation, in chemically stratified sediments or water columns. Depending on their latitude and whether the bacteria are north or south of the equator, the Earth's magnetic field has one of the two possible polarities, and

4118-399: The ocean, and as such were amongst the first of the phytoplankton . The first primary producers that used photosynthesis were oceanic cyanobacteria about 2.3 billion years ago. The release of molecular oxygen by cyanobacteria as a by-product of photosynthesis induced global changes in the Earth's environment. Because oxygen was toxic to most life on Earth at the time, this led to

4189-439: The oceans, and the archaea in plankton may be one of the most abundant groups of organisms on the planet. Archaea are a major part of Earth's life and may play roles in both the carbon cycle and the nitrogen cycle . Thermoproteota (also called Crenarchaeota or eocytes) are a phylum of archaea thought to be very abundant in marine environments and one of the main contributors to the fixation of carbon. Nanoarchaeum equitans

4260-400: The oldest forms of life on Earth was reported in the form of fossilized microorganisms discovered in hydrothermal vent precipitates that may have lived as early as 4.28 billion years ago, not long after the oceans formed 4.4 billion years ago, and not long after the formation of the Earth 4.54 billion years ago. Microbial mats of coexisting bacteria and archaea were

4331-501: The partially understood mechanisms of evolutionary developmental biology , in which the genome directs an elaborated series of interactions to produce successively more elaborate structures. The existence of chimaeras and hybrids demonstrates that these mechanisms are "intelligently" robust in the face of radically altered circumstances at all levels from molecular to organismal. Synthetic organisms already take diverse forms, and their diversity will increase. What they all have in common

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4402-444: The planet above weather systems but below commercial air lanes. Some peripatetic microorganisms are swept up from terrestrial dust storms, but most originate from marine microorganisms in sea spray . In 2018, scientists reported that hundreds of millions of viruses and tens of millions of bacteria are deposited daily on every square meter around the planet. Microscopic life undersea is diverse and still poorly understood, such as for

4473-412: The prokaryotes are divided into two domains of life, the microscopic bacteria and the microscopic archaea, while everything else, the eukaryotes, become the third domain. Prokaryotes play important roles in ecosystems as decomposers recycling nutrients. Some prokaryotes are pathogenic , causing disease and even death in plants and animals. Marine prokaryotes are responsible for significant levels of

4544-480: The qualities or attributes that define an entity as an organism, has evolved socially as groups of simpler units (from cells upwards) came to cooperate without conflicts. They propose that cooperation should be used as the "defining trait" of an organism. This would treat many types of collaboration, including the fungus / alga partnership of different species in a lichen , or the permanent sexual partnership of an anglerfish , as an organism. The term "organism" (from

4615-407: The role of viruses in marine ecosystems. Most marine viruses are bacteriophages , which are harmless to plants and animals, but are essential to the regulation of saltwater and freshwater ecosystems. They infect and destroy bacteria and archaea in aquatic microbial communities, and are the most important mechanism of recycling carbon in the marine environment. The organic molecules released from

4686-612: The same argument, or a criterion of high co-operation and low conflict, would include some mutualistic (e.g. lichens) and sexual partnerships (e.g. anglerfish ) as organisms. If group selection occurs, then a group could be viewed as a superorganism , optimized by group adaptation . Another view is that attributes like autonomy, genetic homogeneity and genetic uniqueness should be examined separately rather than demanding that an organism should have all of them; if so, there are multiple dimensions to biological individuality, resulting in several types of organism. A unicellular organism

4757-437: The smallest known cellular organisms, and the smallest known archaeon. Marine archaea have been classified as follows: Prokaryote metabolism is classified into nutritional groups on the basis of three major criteria: the source of energy , the electron donors used, and the source of carbon used for growth. Marine prokaryotes have diversified greatly throughout their long existence. The metabolism of prokaryotes

4828-415: The surface of low aqueous films. The mechanisms of this motility are only partially known. The speed of gliding varies between organisms, and the reversal of direction is seemingly regulated by some sort of internal clock. For example, the apicomplexans are able to travel at fast rates between 1–10 μm/s. In contrast Myxococcus xanthus bacteria glide at a rate of 5 μm/min. Swarming motility

4899-459: Was co-evolution of viruses and host cells. If host cells did not exist, viral evolution would be impossible. As for reproduction, viruses rely on hosts' machinery to replicate. The discovery of viruses with genes coding for energy metabolism and protein synthesis fuelled the debate about whether viruses are living organisms, but the genes have a cellular origin. Most likely, they were acquired through horizontal gene transfer from viral hosts. There

4970-437: Was firmly established by the microbiologists Roger Stanier and C. B. van Niel in their 1962 paper, The concept of a bacterium . One reason for this classification was so what was then often called blue-green algae (now called cyanobacteria ) would cease to be classified as plants but grouped with bacteria. In 1990 Carl Woese et al. introduced the three-domain system . The prokaryotes were split into two domains ,

5041-566: Was reported in Nature in February 2013 that the bacteriophage HTVC010P , which attacks P. ubique , has been discovered and is probably the most common organism on the planet. Roseobacter is also one of the most abundant and versatile microorganisms in the ocean. They are diversified across different types of marine habitats, from coastal to open oceans and from sea ice to sea floor, and make up about 25% of coastal marine bacteria. Members of

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