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Genomic Standards Consortium

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The Genomic Standards Consortium (GSC) is an initiative working towards richer descriptions of our collection of genomes, metagenomes and marker genes. Established in September 2005, this international community includes representatives from a range of major sequencing and bioinformatics centres (including NCBI , EMBL , DDBJ , JCVI , JGI , EBI , Sanger , FIG) and research institutions. The goal of the GSC is to promote mechanisms for standardizing the description of (meta)genomes, including the exchange and integration of (meta)genomic data. The number and pace of genomic and metagenomic sequencing projects will only increase as the use of ultra-high-throughput methods becomes common place and standards are vital to scientific progress and data sharing .

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86-689: Community-driven standards have the best chance of success if developed within the auspices of international working groups. Participants in the GSC include biologists, computer scientists, those building genomic databases and conducting large-scale comparative genomic analyses, and those with experience of building community-based standards. The mission of the GSC is to work with the wider community towards: Fulfilling this mission by holding face-to-face meetings, forming working groups, and building consensus products that can be widely used in this community. Bringing together investigators working in different systems to work on

172-427: A relational database to categorize cultural works and their images. Relational databases and metadata work to document and describe the complex relationships amongst cultural objects and multi-faceted works of art, as well as between objects and places, people, and artistic movements. Relational database structures are also beneficial within collecting institutions and museums because they allow for archivists to make

258-454: A "data element" registry, its purpose is to support describing and registering metadata content independently of any particular application, lending the descriptions to being discovered and reused by humans or computers in developing new applications, databases, or for analysis of data collected in accordance with the registered metadata content. This standard has become the general basis for other kinds of metadata registries, reusing and extending

344-577: A Microarray Experiment (MIAME) describes the Minimum Information About a Microarray Experiment that is needed to enable the interpretation of the results of the experiment unambiguously and potentially to reproduce the experiment and is aimed at facilitating the dissemination of data from microarray experiments. It was published by the FGED Society in 2001 and was the first published minimum information standard for high-throughput experiments in

430-482: A Simulation Experiment ( MIASE ) is an effort to standardize the description of simulation experiments in the field of systems biology. The Standards for Reporting Enzymology Data ( STRENDA ) is an initiative which specifically focuses on the development of guidelines for reporting (describing metadata) enzymology experiments with the aim to improve the quality of enzymology data published in the scientific literature. Metadata Metadata (or metainformation )

516-494: A balanced group of participants. Further, this development process must be supported by providing mechanisms for achieving compliance if a checklist is to be adopted as a tool for the standardization of a particular area of knowledge. Work towards this goal has spawned a set of interlocking projects that are described in more detail here: GSC projects . These include The Genomic Contextual Data Markup Language (GCDML), Genomic Rosetta Stone (GRS), Habitat-Lite. Newer projects include

602-772: A class-attribute-value triple. The first 2 elements of the triple (class, attribute) are pieces of some structural metadata having a defined semantic. The third element is a value, preferably from some controlled vocabulary, some reference (master) data. The combination of the metadata and master data elements results in a statement which is a metacontent statement i.e. "metacontent = metadata + master data". All of these elements can be thought of as "vocabulary". Both metadata and master data are vocabularies that can be assembled into metacontent statements. There are many sources of these vocabularies, both meta and master data: UML, EDIFACT, XSD, Dewey/UDC/LoC, SKOS, ISO-25964, Pantone, Linnaean Binomial Nomenclature, etc. Using controlled vocabularies for

688-417: A clear distinction between cultural objects and their images; an unclear distinction could lead to confusing and inaccurate searches. An object's materiality, function, and purpose, as well as the size (e.g., measurements, such as height, width, weight), storage requirements (e.g., climate-controlled environment), and focus of the museum and collection, influence the descriptive depth of the data attributed to

774-448: A common problem. The GSC has published a “Minimum Information about a (Meta)Genome Sequence” specification and has now completed a "Minimum Information about an ENvironmental Sequence" specification. MIGS/MIMS/MIMARKS provides an extension of the minimum information already captured by the primary nucleotide sequence archives ( INSDC or DDBJ/ENA/GenBank). The development of any checklist must be an open and iterative process that involves

860-603: A flow cytometry experiment . Criteria for Minimum Information About a Phylogenetic Analysis were described in 2006. The MIRAGE project is supported and coordinated by the Beilstein-Institut to establish guidelines for data handling and processing in glycomics research [1] The Minimal Information Required In the Annotation of Models ( MIRIAM ), is a set of rules for the curation and annotation of quantitative models of biological systems. The Minimum Information About

946-481: A key topic in efforts toward international standardization . Standards for metadata in digital libraries include Dublin Core , METS , MODS , DDI , DOI , URN , PREMIS schema, EML , and OAI-PMH . Leading libraries in the world give hints on their metadata standards strategies. The use and creation of metadata in library and information science also include scientific publications: Metadata for scientific publications

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1032-408: A library might hold in its collection. Until the 1980s, many library catalogs used 3x5 inch cards in file drawers to display a book's title, author, subject matter, and an abbreviated alpha-numeric string ( call number ) which indicated the physical location of the book within the library's shelves. The Dewey Decimal System employed by libraries for the classification of library materials by subject

1118-511: A problem with alternative approaches: Here's a new language we want you to learn, and now you need to output these additional files on your server. It's a hassle. (Microformats) lower the barrier to entry. Most common types of computer files can embed metadata, including documents, (e.g. Microsoft Office files, OpenDocument files, PDF ) images, (e.g. JPEG , PNG ) Video files, (e.g. AVI , MP4 ) and audio files. (e.g. WAV , MP3 ) Metadata may be added to files by users, but some metadata

1204-487: A reader to interpret and critically evaluate the processes performed and the conclusions reached, and to support their experimental corroboration. In practice a MINI module comprises a checklist of information that should be provided (for example about the protocols employed) when a data set is described for publication. The full specification of the MINI module can be found here. Minimum Information About an RNAi Experiment (MIARE)

1290-427: A resource. Statistical data repositories have their own requirements for metadata in order to describe not only the source and quality of the data but also what statistical processes were used to create the data, which is of particular importance to the statistical community in order to both validate and improve the process of statistical data production. An additional type of metadata beginning to be more developed

1376-516: A wide variety of scales from single ion channel proteins to whole tissues. This document is a single module, as part of the Minimum Information about a Neuroscience investigation (MINI) family of reporting guideline documents, produced by community consultation and continually available for public comment. A MINI module represents the minimum information that should be reported about a dataset to facilitate computational access and analysis to allow

1462-458: A year, regardless of whether or not they [ever] were persons of interest to the agency. Geospatial metadata relates to Geographic Information Systems (GIS) files, maps, images, and other data that is location-based. Metadata is used in GIS to document the characteristics and attributes of geographic data, such as database files and data that is developed within a GIS. It includes details like who developed

1548-676: Is accessibility metadata . Accessibility metadata is not a new concept to libraries; however, advances in universal design have raised its profile. Projects like Cloud4All and GPII identified the lack of common terminologies and models to describe the needs and preferences of users and information that fits those needs as a major gap in providing universal access solutions. Those types of information are accessibility metadata. Schema.org has incorporated several accessibility properties based on IMS Global Access for All Information Model Data Element Specification. The Wiki page WebSchemas/Accessibility lists several properties and their values. While

1634-842: Is " data that provides information about other data", but not the content of the data itself, such as the text of a message or the image itself. There are many distinct types of metadata, including: Metadata is not strictly bound to one of these categories, as it can describe a piece of data in many other ways. Metadata has various purposes. It can help users find relevant information and discover resources . It can also help organize electronic resources, provide digital identification, and archive and preserve resources. Metadata allows users to access resources by "allowing resources to be found by relevant criteria, identifying resources, bringing similar resources together, distinguishing dissimilar resources, and giving location information". Metadata of telecommunication activities including Internet traffic

1720-414: Is a data reporting guideline which describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. Advances in genomics and functional genomics have enabled large-scale analyses of gene and protein function by means of high-throughput cell biological analyses. Thereby, cells in culture can be perturbed in vitro and

1806-548: Is a set of reporting requirements – typically presented as a table or a checklist. Secondly, there is a data format. Information about an experiment needs to be converted into the appropriate data format for it to be submitted to the relevant database. In the case of MIAME , the data format is provided in spreadsheet format (MAGE-TAB). Some of the communities that maintain minimum information standards also provide tools to help experimental researchers to annotate their data. The individual minimum information standards are brought by

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1892-438: Is an early example of metadata usage. The early paper catalog had information regarding whichever item was described on said card: title, author, subject, and a number as to where to find said item. Beginning in the 1980s and 1990s, many libraries replaced these paper file cards with computer databases. These computer databases make it much easier and faster for users to do keyword searches. Another form of older metadata collection

1978-486: Is being accomplished in the national and international standards communities, especially ANSI (American National Standards Institute) and ISO (International Organization for Standardization) to reach a consensus on standardizing metadata and registries. The core metadata registry standard is ISO / IEC 11179 Metadata Registries (MDR), the framework for the standard is described in ISO/IEC 11179-1:2004. A new edition of Part 1

2064-483: Is clear that he uses the term in the ISO 11179 "traditional" sense, which is "structural metadata" i.e. "data about the containers of data"; rather than the alternative sense "content about individual instances of data content" or metacontent, the type of data usually found in library catalogs. Since then the fields of information management, information science, information technology, librarianship, and GIS have widely adopted

2150-464: Is completely discrete from other elements and classified according to one dimension only. An example of a linear metadata schema is the Dublin Core schema, which is one-dimensional. Metadata schemata are often 2 dimensional, or planar, where each element is completely discrete from other elements but classified according to 2 orthogonal dimensions. The degree to which the data or metadata is structured

2236-557: Is in its final stage for publication in 2015 or early 2016. It has been revised to align with the current edition of Part 3, ISO/IEC 11179-3:2013 which extends the MDR to support the registration of Concept Systems. (see ISO/IEC 11179 ). This standard specifies a schema for recording both the meaning and technical structure of the data for unambiguous usage by humans and computers. ISO/IEC 11179 standard refers to metadata as information objects about data, or "data about data". In ISO/IEC 11179 Part-3,

2322-454: Is more work to be done. Metadata (metacontent) or, more correctly, the vocabularies used to assemble metadata (metacontent) statements, is typically structured according to a standardized concept using a well-defined metadata scheme, including metadata standards and metadata models . Tools such as controlled vocabularies , taxonomies , thesauri , data dictionaries , and metadata registries can be used to apply further standardization to

2408-608: Is most commonly used in museum contexts for object identification and resource recovery purposes. Metadata is developed and applied within collecting institutions and museums in order to: Many museums and cultural heritage centers recognize that given the diversity of artworks and cultural objects, no single model or standard suffices to describe and catalog cultural works. For example, a sculpted Indigenous artifact could be classified as an artwork, an archaeological artifact, or an Indigenous heritage item. The early stages of standardization in archiving, description and cataloging within

2494-528: Is no intelligence or "inferencing" occurring, just the illusion thereof. Metadata schemata can be hierarchical in nature where relationships exist between metadata elements and elements are nested so that parent-child relationships exist between the elements. An example of a hierarchical metadata schema is the IEEE LOM schema, in which metadata elements may belong to a parent metadata element. Metadata schemata can also be one-dimensional, or linear, where each element

2580-636: Is not only on creation and capture, but moreover on maintenance costs. As soon as the metadata structures become outdated, so too is the access to the referred data. Hence granularity must take into account the effort to create the metadata as well as the effort to maintain it. In all cases where the metadata schemata exceed the planar depiction, some type of hypermapping is required to enable display and view of metadata according to chosen aspect and to serve special views. Hypermapping frequently applies to layering of geographical and geological information overlays. International standards apply to metadata. Much work

2666-494: Is often automatically added to files by authoring applications or by devices used to produce the files, without user intervention. While metadata in files are useful for finding them, they can be a privacy hazard when the files are shared. Using metadata removal tools to clean files before sharing them can mitigate this risk. Metadata may be written into a digital photo file that will identify who owns it, copyright and contact information, what brand or model of camera created

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2752-403: Is often created by journal publishers and citation databases such as PubMed and Web of Science . The data contained within manuscripts or accompanying them as supplementary material is less often subject to metadata creation, though they may be submitted to e.g. biomedical databases after publication. The original authors and database curators then become responsible for metadata creation, with

2838-646: Is primarily maintained through the EMBL-EBI Industry program (www.ebi.ac.uk/industry). This specification is being developed by the Genomic Standards Consortium The Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) is a standard related to flow cytometry which establishes criteria to record information on experimental overview, samples, instrumentation and data analysis. It promotes consistent annotation of clinical, biological and technical issues surrounding

2924-412: Is referred to as "granularity" . "Granularity" refers to how much detail is provided. Metadata with a high granularity allows for deeper, more detailed, and more structured information and enables a greater level of technical manipulation. A lower level of granularity means that metadata can be created for considerably lower costs but will not provide as detailed information. The major impact of granularity

3010-764: Is saved as persistent repository and describe business objects in various enterprise systems and applications. Structural metadata commonality is also important to support data virtualization. Standardization and harmonization work has brought advantages to industry efforts to build metadata systems in the statistical community. Several metadata guidelines and standards such as the European Statistics Code of Practice and ISO 17369:2013 ( Statistical Data and Metadata Exchange or SDMX) provide key principles for how businesses, government bodies, and other entities should manage statistical data and metadata. Entities such as Eurostat , European System of Central Banks , and

3096-522: Is since 2008 being harmonized by "Minimum Information about a Biomedical or Biological Investigation" (MIBBI) project. MIAPPE is an open, community driven project to harmonize data from plant phenotyping experiments. MIAPPE comprises both a conceptual checklist of metadata required to adequately describe a plant phenotyping experiment. Published in 2009 these guidelines for the basis of requirements by many journals when submitting QPCR data, sadly they are not adhered to enough. Minimum Information About

3182-519: Is stored in the integrated library management system, ILMS , using the MARC metadata standard. The purpose is to direct patrons to the physical or electronic location of items or areas they seek as well as to provide a description of the item/s in question. More recent and specialized instances of library metadata include the establishment of digital libraries including e-print repositories and digital image libraries. While often based on library principles,

3268-478: Is the bibliographic classification, the subject, the Dewey Decimal class number . There is always an implied statement in any "classification" of some object. To classify an object as, for example, Dewey class number 514 (Topology) (i.e. books having the number 514 on their spine) the implied statement is: "<book><subject heading><514>". This is a subject-predicate-object triple, or more importantly,

3354-476: Is the use by the US Census Bureau of what is known as the "Long Form". The Long Form asks questions that are used to create demographic data to find patterns of distribution. Libraries employ metadata in library catalogues , most commonly as part of an Integrated Library Management System . Metadata is obtained by cataloging resources such as books, periodicals, DVDs, web pages or digital images. This data

3440-591: Is to ensure the data generated by these methods can be easily verified, analysed and interpreted by the wider scientific community . Ultimately, they facilitate the transfer of data from journal articles (unstructured data) into databases (structured data) in a form that enables data to be mined across multiple data sets. Minimal information standards are available for a vast variety of experiment types including microarray ( MIAME ), RNAseq ( MINSEQE ), metabolomics (MSI) and proteomics ( MIAPE ). Minimum information standards typically have two parts. Firstly, there

3526-567: Is usually expressed as a set of keywords in a natural language. According to Ralph Kimball , metadata can be divided into three categories: technical metadata (or internal metadata), business metadata (or external metadata), and process metadata . NISO distinguishes three types of metadata: descriptive, structural, and administrative. Descriptive metadata is typically used for discovery and identification, as information to search and locate an object, such as title, authors, subjects, keywords, and publisher. Structural metadata describes how

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3612-420: Is very widely collected by various national governmental organizations. This data is used for the purposes of traffic analysis and can be used for mass surveillance . Metadata was traditionally used in the card catalogs of libraries until the 1980s when libraries converted their catalog data to digital databases . In the 2000s, as data and information were increasingly stored digitally, this digital data

3698-541: The Earth Microbiome Project maintain the Biological Observation Matrix (BIOM) file format, an open JSON -based file format for representing arbitrary observation by sample contingency tables with associated sample and observation metadata. The GSC maintains a list of publications on its wiki - GSC Publications . This list includes reports from all workshops, articles from the special issue of

3784-420: The U.S. Environmental Protection Agency have implemented these and other such standards and guidelines with the goal of improving "efficiency when managing statistical business processes". Metadata has been used in various ways as a means of cataloging items in libraries in both digital and analog formats. Such data helps classify, aggregate, identify, and locate a particular book, DVD, magazine, or any object

3870-419: The contents and context of data or data files increases its usefulness. For example, a web page may include metadata specifying what software language the page is written in (e.g., HTML), what tools were used to create it, what subjects the page is about, and where to find more information about the subject. This metadata can automatically improve the reader's experience and make it easier for users to find

3956-496: The CCO, are integrated within a Museum's Collections Management System (CMS), a database through which museums are able to manage their collections, acquisitions, loans and conservation. Scholars and professionals in the field note that the "quickly evolving landscape of standards and technologies" creates challenges for cultural documentarians, specifically non-technically trained professionals. Most collecting institutions and museums use

4042-558: The Library of Congress Controlled Vocabularies are reputable within the museum community and are recommended by CCO standards. Museums are encouraged to use controlled vocabularies that are contextual and relevant to their collections and enhance the functionality of their digital information systems. Controlled Vocabularies are beneficial within databases because they provide a high level of consistency, improving resource retrieval. Metadata structures, including controlled vocabularies, reflect

4128-607: The M5 project. The GSC is interested in making and building links with other communities. As stated above, the GSC is engaged in ontology development within the OBO Foundry . The GSC is also a founding member community of the Minimum Information about a Biomedical or Biological Investigation (MIBBI) , an umbrella community for supporting and co-ordinating the development of checklists describing Minimum Information Standards . GSC and

4214-757: The Molecular Interaction worktrack of the HUPO-PSI (www.psidev.info) and describes the Minimum Information about a Molecular Interaction experiment. The Minimum Information About a Protein Affinity Reagent has been developed and maintained by the Molecular Interaction worktrack of the HUPO-PSI (www.psidev.info)in conjunction with the HUPO Antibody Initiative and a European consortium of binder producers and seeks to encourage users to improve their description of binding reagents, such as antibodies, used in

4300-802: The assistance of automated processes. Comprehensive metadata for all experimental data is the foundation of the FAIR Guiding Principles , or the standards for ensuring research data are findable , accessible , interoperable , and reusable . Such metadata can then be utilized, complemented, and made accessible in useful ways. OpenAlex is a free online index of over 200 million scientific documents that integrates and provides metadata such as sources, citations , author information , scientific fields , and research topics. Its API and open source website can be used for metascience, scientometrics , and novel tools that query this semantic web of papers . Another project under development, Scholia , uses

4386-563: The author is, when the document was written, and a short summary of the document. Metadata within web pages can also contain descriptions of page content, as well as key words linked to the content. These links are often called "Metatags", which were used as the primary factor in determining order for a web search until the late 1990s. The reliance on metatags in web searches was decreased in the late 1990s because of "keyword stuffing", whereby metatags were being largely misused to trick search engines into thinking some websites had more relevance in

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4472-509: The biological processes addressed and understand biological principles. We propose the Minimum Information About a Cellular Assay (MIACA) for reporting a cellular assay, and CA-OM, the modular cellular assay object model, to facilitate exchange of data and accompanying information, and to compare and integrate data that originate from different, albeit complementary approaches, and to elucidate higher order principles. Documents describing MIACA are available and provide further information as well as

4558-435: The checklist of terms that should be reported. The Minimum Information About a Proteomic Experiment documents describe information which should be given along with a proteomic experiment. The parent document describes the processes and principles underpinning the development of a series of domain specific documents which now cover all aspects of a MS-based proteomics workflow. This document has been developed and maintained by

4644-546: The communities of cross-disciplinary specialists focused on the problematic of the specific method used in experimental biology. The standards then provide specifications what information about the experiments ( metadata ) is crucial and important to be reported together with the resultant data to make it comprehensive. The need for this standardization is largely driven by the development of high-throughput experimental methods that provide tremendous amounts of data. The development of minimum information standards of different methods

4730-574: The components of an object are organized. An example of structural metadata would be how pages are ordered to form chapters of a book. Finally, administrative metadata gives information to help manage the source. Administrative metadata refers to the technical information, such as file type, or when and how the file was created. Two sub-types of administrative metadata are rights management metadata and preservation metadata. Rights management metadata explains intellectual property rights , while preservation metadata contains information to preserve and save

4816-428: The components of metacontent statements, whether for indexing or finding, is endorsed by ISO 25964 : "If both the indexer and the searcher are guided to choose the same term for the same concept, then relevant documents will be retrieved." This is particularly relevant when considering search engines of the internet, such as Google. The process indexes pages and then matches text strings using its complex algorithm; there

4902-741: The content is desirable. This is particularly useful in video applications such as Automatic Number Plate Recognition and Vehicle Recognition Identification software, wherein license plate data is saved and used to create reports and alerts. There are 2 sources in which video metadata is derived: (1) operational gathered metadata, that is information about the content produced, such as the type of equipment, software, date, and location; (2) human-authored metadata, to improve search engine visibility, discoverability, audience engagement, and providing advertising opportunities to video publishers. Avid's MetaSync and Adobe's Bridge are examples of professional video editing software with access to metadata. Information on

4988-464: The data, when it was collected, how it was processed, and what formats it's available in, and then delivers the context for the data to be used effectively. Metadata can be created either by automated information processing or by manual work. Elementary metadata captured by computers can include information about when an object was created, who created it, when it was last updated, file size, and file extension. In this context an object refers to any of

5074-413: The data; it is used to summarize basic information about data that can make tracking and working with specific data easier. Some examples include: For example, a digital image may include metadata that describes the size of the image, its color depth, resolution, when it was created, the shutter speed, and other data. A text document's metadata may contain information about how long the document is, who

5160-467: The efforts to describe and standardize the varied accessibility needs of information seekers are beginning to become more robust, their adoption into established metadata schemas has not been as developed. For example, while Dublin Core (DC)'s "audience" and MARC 21's "reading level" could be used to identify resources suitable for users with dyslexia and DC's "format" could be used to identify resources available in braille, audio, or large print formats, there

5246-501: The file, along with exposure information (shutter speed, f-stop, etc.) and descriptive information, such as keywords about the photo, making the file or image searchable on a computer and/or the Internet. Some metadata is created by the camera such as, color space, color channels, exposure time, and aperture (EXIF), while some is input by the photographer and/or software after downloading to a computer. Most digital cameras write metadata about

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5332-446: The focus on non-librarian use, especially in providing metadata, means they do not follow traditional or common cataloging approaches. Given the custom nature of included materials, metadata fields are often specially created e.g. taxonomic classification fields, location fields, keywords, or copyright statement. Standard file information such as file size and format are usually automatically included. Library operation has for decades been

5418-425: The following: A metadata engine collects, stores and analyzes information about data and metadata in use within a domain. Data virtualization emerged in the 2000s as the new software technology to complete the virtualization "stack" in the enterprise. Metadata is used in data virtualization servers which are enterprise infrastructure components, alongside database and application servers. Metadata in these servers

5504-434: The induced effects recorded and analyzed. Perturbations can be triggered in several ways, for instance with molecules (siRNAs, expression constructs, small chemical compounds, ligands for receptors, etc.), through environmental stresses (such as temperature shift, serum starvation, oxygen deprivation, etc.), or combinations thereof. The cellular responses to such perturbations are analyzed in order to identify molecular events in

5590-638: The information objects are data about Data Elements, Value Domains, and other reusable semantic and representational information objects that describe the meaning and technical details of a data item. This standard also prescribes the details for a metadata registry, and for registering and administering the information objects within a Metadata Registry. ISO/IEC 11179 Part 3 also has provisions for describing compound structures that are derivations of other data elements, for example through calculations, collections of one or more data elements, or other forms of derived data. While this standard describes itself originally as

5676-546: The journal OMICS on data standards, and the publications describing the MIGS/MIMS and MIMARKS specifications in the journal Nature Biotechnology (May 2008 and May 2011 respectively). The GSC has also published a series of papers "Genomic Standards Consortium and Beyond" in the journal GigaScience . Minimum Information Standards Minimum information standard s are sets of guidelines and formats for reporting data derived by specific high-throughput methods. Their purpose

5762-417: The level of contribution and the responsibilities. Moreover, various metadata about scientific outputs can be created or complemented – for instance, scite.ai attempts to track and link citations of papers as 'Supporting', 'Mentioning' or 'Contrasting' the study. Other examples include developments of alternative metrics – which, beyond providing help for assessment and findability, also aggregate many of

5848-439: The life sciences. MIAME contains a number of extensions to cover specific biological domains, including MIAME-env, MIAME-nut and MIAME-tox, covering environmental genomics, nutritional genomics and toxogenomics, respectively. Electrophysiology is a technology used to study the electrical properties of biological cells and tissues. Electrophysiology typically involves the measurements of voltage change or electric current flow on

5934-434: The location the photo was taken from may also be included. Photographic Metadata Standards are governed by organizations that develop the following standards. They include, but are not limited to: Metadata is particularly useful in video, where information about its contents (such as transcripts of conversations and text descriptions of its scenes) is not directly understandable by a computer, but where an efficient search of

6020-438: The metadata application is manifold, covering a large variety of fields, there are specialized and well-accepted models to specify types of metadata. Bretherton & Singley (1994) distinguish between two distinct classes: structural/control metadata and guide metadata. Structural metadata describes the structure of database objects such as tables, columns, keys and indexes. Guide metadata helps humans find specific items and

6106-457: The metadata of scientific publications for various visualizations and aggregation features such as providing a simple user interface summarizing literature about a specific feature of the SARS-CoV-2 virus using Wikidata 's "main subject" property. In research labor, transparent metadata about authors' contributions to works have been proposed – e.g. the role played in the production of the paper,

6192-524: The metadata. Structural metadata commonality is also of paramount importance in data model development and in database design . Metadata (metacontent) syntax refers to the rules created to structure the fields or elements of metadata (metacontent). A single metadata scheme may be expressed in a number of different markup or programming languages, each of which requires a different syntax. For example, Dublin Core may be expressed in plain text, HTML , XML , and RDF . A common example of (guide) metacontent

6278-704: The model number, shutter speed, etc., and some enable you to edit it; this functionality has been available on most Nikon DSLRs since the Nikon D3 , on most new Canon cameras since the Canon EOS 7D , and on most Pentax DSLRs since the Pentax K-3. Metadata can be used to make organizing in post-production easier with the use of key-wording. Filters can be used to analyze a specific set of photographs and create selections on criteria like rating or capture time. On devices with geolocation capabilities like GPS (smartphones in particular),

6364-670: The museum community began in the late 1990s with the development of standards such as Categories for the Description of Works of Art (CDWA), Spectrum, CIDOC Conceptual Reference Model (CRM), Cataloging Cultural Objects (CCO) and the CDWA Lite XML schema. These standards use HTML and XML markup languages for machine processing, publication and implementation. The Anglo-American Cataloguing Rules (AACR), originally developed for characterizing books, have also been applied to cultural objects, works of art and architecture. Standards, such as

6450-427: The numbers themselves can be perceived as the data. But if given the context that this database is a log of a book collection, those 13-digit numbers may now be identified as ISBNs   –  information that refers to the book, but is not itself the information within the book. The term "metadata" was coined in 1968 by Philip Bagley, in his book "Extension of Programming Language Concepts" where it

6536-635: The object by cultural documentarians. The established institutional cataloging practices, goals, and expertise of cultural documentarians and database structure also influence the information ascribed to cultural objects and the ways in which cultural objects are categorized. Additionally, museums often employ standardized commercial collection management software that prescribes and limits the ways in which archivists can describe artworks and cultural objects. As well, collecting institutions and museums use Controlled Vocabularies to describe cultural objects and artworks in their collections. Getty Vocabularies and

6622-426: The process of protein identification. The Minimum Information About a Bioactive Entity was produced by representatives from both large pharma and academia who are looking to improve the description of usually small molecules which bind to, and potentially modulate the activity of, specific targets in a living organism. This document encompasses drug-like molecules as well as herbicides, pesticides and food additives. It

6708-588: The public discussions about a scientific paper on social media such as Reddit , citations on Misplaced Pages , and reports about the study in the news media – and a call for showing whether or not the original findings are confirmed or could get reproduced . Metadata in a museum context is the information that trained cultural documentation specialists, such as archivists , librarians , museum registrars and curators , create to index, structure, describe, identify, or otherwise specify works of art, architecture, cultural objects and their images. Descriptive metadata

6794-503: The purposes of discovery. The original set of 15 classic metadata terms, known as the Dublin Core Metadata Element Set are endorsed in the following standards documents: The W3C Data Catalog Vocabulary (DCAT) is an RDF vocabulary that supplements Dublin Core with classes for Dataset, Data Service, Catalog, and Catalog Record. DCAT also uses elements from FOAF, PROV-O, and OWL-Time. DCAT provides an RDF model to support

6880-452: The registration and administration portion of the standard. The Geospatial community has a tradition of specialized geospatial metadata standards, particularly building on traditions of map- and image-libraries and catalogs. Formal metadata is usually essential for geospatial data, as common text-processing approaches are not applicable. The Dublin Core metadata terms are a set of vocabulary terms that can be used to describe resources for

6966-493: The search than they really did. Metadata can be stored and managed in a database , often called a metadata registry or metadata repository . However, without context and a point of reference, it might be impossible to identify metadata just by looking at it. For example: by itself, a database containing several numbers, all 13 digits long could be the results of calculations or a list of numbers to plug into an equation  –  without any other context,

7052-467: The term. In these fields, the word metadata is defined as "data about data". While this is the generally accepted definition, various disciplines have adopted their own more specific explanations and uses of the term. Slate reported in 2013 that the United States government's interpretation of "metadata" could be broad, and might include message content such as the subject lines of emails. While

7138-592: The times, origins and destinations of phone calls, electronic messages, instant messages, and other modes of telecommunication, as opposed to message content, is another form of metadata. Bulk collection of this call detail record metadata by intelligence agencies has proven controversial after disclosures by Edward Snowden of the fact that certain Intelligence agencies such as the NSA had been (and perhaps still are) keeping online metadata on millions of internet users for up to

7224-450: The typical structure of a catalog that contains records, each describing a dataset or service. Although not a standard, Microformat (also mentioned in the section metadata on the internet below) is a web-based approach to semantic markup which seeks to re-use existing HTML/XHTML tags to convey metadata. Microformat follows XHTML and HTML standards but is not a standard in itself. One advocate of microformats, Tantek Çelik , characterized

7310-439: The web page online. A CD may include metadata providing information about the musicians, singers, and songwriters whose work appears on the disc. In many countries, government organizations routinely store metadata about emails, telephone calls, web pages, video traffic, IP connections, and cell phone locations. Metadata means "data about data". Metadata is defined as the data providing information about one or more aspects of

7396-628: Was described using metadata standards . The first description of "meta data" for computer systems is purportedly noted by MIT's Center for International Studies experts David Griffel and Stuart McIntosh in 1967: "In summary then, we have statements in an object language about subject descriptions of data and token codes for the data. We also have statements in a meta language describing the data relationships and transformations, and ought/is relations between norm and data." Unique metadata standards exist for different disciplines (e.g., museum collections, digital audio files , websites , etc.). Describing

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