Darwin Core Archive (DwC-A) is a biodiversity informatics data standard that makes use of the Darwin Core terms to produce a single, self-contained dataset for species occurrence, checklist, sampling event or material sample data. Essentially it is a set of text (CSV) files with a simple descriptor (meta.xml) to inform others how your files are organized. The format is defined in the Darwin Core Text Guidelines. It is the preferred format for publishing data to the GBIF network.
21-527: The Darwin Core standard has been used to mobilize the vast majority of specimen occurrence and observational records within the GBIF network. The Darwin Core standard was originally conceived to facilitate the discovery, retrieval, and integration of information about modern biological specimens, their spatio-temporal occurrence, and their supporting evidence housed in collections (physical or digital). The Darwin Core today
42-479: A database over a TCP/IP computer network , developed and maintained by the Library of Congress . It is covered by ANSI / NISO standard Z39.50, and ISO standard 23950. Z39.50 is widely used in library environments, for interlibrary catalogue search and loan , often incorporated into integrated library systems and personal bibliographic reference software , and social media such as LibraryThing . Work on
63-423: A 3 MB file. Therefore, GBIF highly recommends compressing an archive using ZIP or GZIP when generating a DwC-A. An archive requires stable identifiers for core records, but not for extensions. For any kind of shared data it is therefore necessary to have some sort of local record identifiers. It's good practice to maintain – with the original data – identifiers that are stable over time and are not being reused after
84-411: A common set of terms. The central idea of an archive is that its data files are logically arranged in a star-like manner, with one core data file surrounded by any number of ’extensions’. Each extension record (or ‘extension file row’) points to a record in the core file; in this way, zero to many extension records can exist for each single core record, a more space-efficient method for data transfer than
105-441: A standard by Biodiversity Information Standards (TDWG) since then, Darwin Core has had numerous previous versions in production usage. The published standard contains a normative term list with the complete history of the versions of terms leading to the current standard. Z39.50 Z39.50 is an international standard client–server , application layer communications protocol for searching and retrieving information from
126-580: Is a body of standards intended to facilitate the sharing of information about biological diversity. The DwC includes a glossary of terms, and documentation providing reference definitions, examples, and commentary. An overview of the currently adopted terms and concepts can be found in the Darwin Core quick reference guide maintained by TDWG . The DwC operational unit is primarily based on taxa , their occurrence in nature as documented by observations, specimens, and samples, and related information. Included in
147-518: Is a pre- Web technology, and various working groups are attempting to update it to fit better into the modern environment. These attempts fall under the designation ZING (Z39.50 International: Next Generation), and pursue various strategies. The successors to Z39.50 are the twin protocols SRU / SRW ( Search/Retrieve via URL / Search/Retrieve Web service ), which drop the Z39.50 communications protocol (replacing it with HTTP ) while still attempting to preserve
168-515: Is an extension of Dublin Core for biodiversity informatics . It is meant to provide a stable standard reference for sharing information on biological diversity ( biodiversity ). The terms described in this standard are a part of a larger set of vocabularies and technical specifications under development and maintained by Biodiversity Information Standards (TDWG) (formerly the Taxonomic Databases Working Group). The Darwin Core
189-531: Is broader in scope. It aims to provide a stable, standard reference for sharing information on biological diversity. As a glossary of terms, the Darwin Core provides stable semantic definitions with the goal of being maximally reusable in a variety of contexts. This means that Darwin Core may still be used in the same way it has historically been used, but may also serve as the basis for building more complex exchange formats, while still ensuring interoperability through
210-470: The Z39.50 protocol began in the 1970s, and led to successive versions in 1988, 1992, 1995 and 2003. The Contextual Query Language (formerly called the Common Query Language) is based on Z39.50 semantics. The protocol supports search, retrieval, sort, and browse. Search queries contain attributes, typically from the bib-1 attribute set which defines six attributes to specify information searches on
231-644: The alternative of including all the data within a single table which could otherwise contain many empty cells. Details about recommended extensions can be found in their respective subsections and will be extensively documented in the GBIF registry, which will catalogue all available extensions. Sharing entire datasets instead of using pageable web services like DiGIR and TAPIR allows much simpler and more efficient data transfer. For example, retrieving 260,000 records via TAPIR takes about nine hours, issuing 1,300 http requests to transfer 500 MB of XML-formatted data. The exact same dataset, encoded as DwC-A and zipped, becomes
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#1733084967803252-487: The benefits of the query syntax. SRU is REST -based, and enables queries to be expressed in URL query strings; SRW uses SOAP . Both expect search results to be returned as XML . These projects have a much lower barrier to entry for developers than the original Z39.50 protocol, allowing the relatively small market for library software to benefit from the web service tools developed for much larger markets. Alternatives include
273-458: The data types and constraints are not provided in the term definitions, recommendations are made about how to restrict the values where appropriate, for instance by suggesting the use of controlled vocabularies . DwC standards are versioned and are constantly evolving, and working groups frequently add to the documentation practical examples that discuss, refine, and expand the normative definitions of each term. This approach to documentation allows
294-629: The first meeting of the ZBIG held at the University of Kansas in 1998 while commenting on the profile's conceptual similarity with Dublin Core. The Darwin Core profile was later expressed as an XML Schema document for use by the Distributed Generic Information Retrieval (DiGIR) protocol. A TDWG task group was created to revise the Darwin Core, and a ratified metadata standard was officially released on 9 October 2009. Though ratified as
315-545: The inconsistency is the Bath Profile (named after Bath , England, where the working group first met in 1999). This document rigidly specifies the search syntax to employ for common bibliographic searches, and the expected response of Bath-compliant servers. Implementation of the Bath Profile has been slow but is gradually improving the Z39.50 landscape . The Bath Profile is maintained by Library and Archives Canada . Z39.50
336-527: The record is deleted. If you can, please provide globally unique identifiers instead of local ones. To be completed. A Darwin Core Archive should contain a file containing metadata describing the whole dataset. The Ecological Metadata Language (EML) is the most common format for this, but simple Dublin Core files are being used too. Darwin Core Darwin Core (often abbreviated to DwC )
357-407: The server computer: use, relation, position, structure, truncation, completeness. The syntax of Z39.50 allows for very complex queries. In practice, the functional complexity is limited by the uneven implementations by developers and commercial vendors. The syntax of Z39.50 is abstracted from the underlying database structure. For example, if the client specifies an author search using attribute 1003,
378-535: The server must determine how to map that search to the indexes it contains. This allows Z39.50 queries to be formulated without knowing anything about the target database, but it also means that results for the same query can vary widely among different servers. One server may have an author index and another may use its index of personal names, whether they are authors or not. A third may have no name index and fall back on its keyword index, and yet another may have no suitable index and return an error. An attempt to remedy
399-411: The standard are documents describing how these terms are managed, how the set of terms can be extended for new purposes, and how the terms can be used. Each DwC term includes a definition and discussions meant to promote the consistent use of the terms across applications and disciplines. In other contexts, such terms might be called properties, elements, fields, columns, attributes, or concepts. Though
420-400: The standard to adapt to new purposes without disrupting existing applications. In practice, Darwin Core decouples the definition and semantics of individual terms from application of these terms in different technologies. Darwin Core provides separate guidelines on how to encode the terms as RDF, XML or text files. The Simple Darwin Core is a specification for one particular way to use
441-432: The terms and to share data about taxa and their occurrences in a simply-structured way. It is likely what is meant if someone were to suggest "formatting your data according to the Darwin Core". Darwin Core was originally created as a Z39.50 profile by the Z39.50 Biology Implementers Group (ZBIG), supported by funding from a USA National Science Foundation award. The name "Darwin Core" was first coined by Allen Allison at
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